Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01247 ATGATCACTGACGGAGTTGAAGACGAAGAGAAGTGGCTTGCTGCTGGGATCGCCGGTCTCCAGCAGAATGCCTTCTACATGCACCGATCTCTGGACTCCAACAATCTCAAAGATGCCTTGAAGTATTCTGCGCAGATGCTGTCTGAGCTACGGACTTCGAAGCTTTCCCCTCATAAATACTACGACTTATACATGCGAGCGTTTGACGAGTTGAGGAAGCTAGAAATTTTCTTTATGGAGGAGACGAAGCGGGGTTGCTCAATAATCGACTTGTACGAACTTGTGCAGCATGCTGGCAACATATTGCCCAGACTGTACCTTCTTTGTACTGTGGGATCGGTGTATATCAAGTCCAAGGAGGCTCCTGCAAAAGATATTCTTAAAGATCTGGTTGAGATGTGCCGCGGTATTCAGCATCCCTTACGTGGGTTATTTTTAAGGAGTTATCTTTCTCAAGTCAGTAGGGATAAGCTACCTGATATTGGTTCAGAATATGAAGGAGATGCAGACACTGTGAACGATGCAGTTGAATTTGTACTCCAAAATTTCACAGAAATGAACAAACTTTGGGTACGAATGCAGCATCAGGGACCTGCCCGGGACAAGGAGAAACGGGAGAAGGAAAGGAGCGAGCTACGTGATCTTGTTGGAAAGAATCTGCATATTCTCAGTCAGGTGGAGGGTGTTGACCTTGATATGTACAAGGATATTGTACTTCCTAGAGTCTTAGAGCAGGTTGTTAATTGTAAAGATGAAATTGCTCAATTTTATTTGATGGAATGCATTATTCAAGTATTTCCTGATGAGTATCACTTACAAACCCTGGATATTTTGTTGGGTGCCTGCCCCCAACTTCAGCCATCTGTTGATATCAAGACTGTGTTGTCCCAATTAATGGAGAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAAGTGTTACCAGAATTCTTGCAAGTCGAAGCTTTCTCAAAACTGAGCAAAGCCATTGGGAAGGTGATAGAAGCACAGGCTGATATGCCTACAGTGGGAGTTGTAACTTTATACTCAGCACTTCTCACATTTACACTTCATGTTCATCCAGATCGTCTTGATTATGCAGATCTTGTTTTGGGAGCATGTGTGAAGAAACTCTCTGGTAAAGGGAAAATTGAAGACAGCAAGGCAACAAAGCAGATTGTTGCCCTTTTGAGTGCGCCATTGGAAAAATATAATGACATTGTCACTACATTGAAGCTATCAAACTATTCACATGTCTTGGAGTACCTTGATGGTGAAACGATCAAAGTGATGGCAACAGTTATTGTACAAAGCATAACAAAGAATAAAACTCAAATATCTACTGCCGAAAATGTTGAGGCATTATTTGAATTGATAAGAGGGCTTATCAAGGATTTAGATGGATCTCCTCCTGATGAGGTTGATGAAGATGATTTCAAGGAGGAGCAAAGTTCTGTTGCTCGTCTTATTCAGATGTTGTATAATGATGACCCAGATGAAATGTTTAAGATAATCTGTACTGTCAAGAAGCATATCCTGACTGGAGGAATAAAGCGTCTGCCATTTACCGTTCCTGCCCTTGTTTTTTCATCTCTCAAGTTGGTTAGGCAATTGCAAGGCCAGGAAGAAAATCCTTTTGGAGATGAGACAGCAACTAACCCGAAGAAAATTTTTCAGCTATTAACTCAGACCATTGAGAGCCTTTCAAGTGTTCCAGCCCCAGAATTGGCGTTTCGGTTGTATCTACAATGTGCTGAGGCTGCAAATGATTGTGATTTAGAACCTGTTGCTTACGAATTTTTTACCCAAGCATACATTCTTTATGAAGAAGAAATTTCAGATTCAAAAGCTCAAGTTACTGCATTACATTTAATAATAGGCACTCTTCAGAAGATGCACGTTTTTGGTGTTGAAAACAGGGATACTTTAACCCACAAAGCCACTGGGTACTCCGCAAAGCTTTTAAAAAAGTCTGATCAATGCCGAGCTGTTTATGCTTGCTCGCATCTCTTCTGGCTTGATGATCATGATAATATGAAGGATGGTGAGAGGGTGATGCTTTGCCTAAAGCGTGCATTAAGAATAGCAAATGCTGCTCAGCAAATGTCGAATGCAACAAGGGGTAGCACCGGGCCAGTGTCGCTTTTCATTGAGATACTGAACAAATACTTGTATTTTTTCGAGAAGGGCAACCCGCAGATCACGGTAGCTACCATCCAGGGCCTAATTGAATTGATCACAACTGAAATGCAAAGCGACACTACTAGTCCAGATTCATCGGCAGATGCATTCTTTGCCAGCACTCTCCGGTACATTGAGTTCCAAAAGCAGAAAGGTGGTGCAGTGGGTGAGAAATACGAGCCCATAAAAATTTAA 2373 41.97 MITDGVEDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLYMRAFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFTEMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLEQVVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLDYADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEYLDGETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEEQSSVARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQEENPFGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVYACSHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVSLFIEILNKYLYFFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQKQKGGAVGEKYEPIKI 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9424372 9436768 - CmaCh16G012470.1 Cma16g01247 311845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01247 790 Gene3D - 466 775 IPR042491 -
Cma16g01247 790 SUPERFAMILY ARM repeat 108 636 IPR016024 -
Cma16g01247 790 PIRSF Retromer_Vps35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cma16g01247 790 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cma16g01247 790 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
Cma16g01247 790 Pfam Vacuolar protein sorting-associated protein 35 12 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01247 K18468 VPS35; vacuolar protein sorting-associated protein 35 - csv:101218480 1503.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01983 Cma-Chr1:12752618 Cma16g01247 Cma-Chr16:9424372 0 dispersed
Cma09g00094 Cma-Chr9:409189 Cma16g01247 Cma-Chr16:9424372 0 dispersed
Cma16g01247 Cma-Chr16:9424372 Cma06g00125 Cma-Chr6:650446 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1157 . Blo16g00090 . . Bpe15g00484 Bpe13g00406 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0827 . . . . . . . . Bda11g01827 . . . Bma03g01040 Bma06g00089 . . . Cma16g01247 . . . . . . . . . . . . . . . . . . . Lsi07g01089 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001755 3 3 2 3 2 2 4 2 2 2 1 1 4 2 1 3 1 2 4 2 2 2 2 2 2 1 2 4 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01247 Cma_Chr16 FPKM 29.473799 34.095921 29.570593 32.029816 30.70163 27.679974 30.883518 25.403688 23.114832 23.181808