Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01252 ATGTTATCAAGCTTGATGAACTTGCTGAGGGCTTGCTGGCAGCCATGTGCCGATCGTCACTTGCGTCGTCGGGGCGGTGGTGGTTCGGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGGCACGACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGTCCTTTGAGCTTGCTTGAGTCTGGACCCTATGGAACTTTTGTAGGAATATACGACGGTCATGGTGGCCCCGAGACGTCGCGGTTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTTGCTACTGAAGAAAAGGCAATGTCTGTAAATGTGATAAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCCATGAACCCGCAGATTGCGGCCGTTGGTTCGTGCTGCCTGGTTGCTGTGATTTGTAATGGGAAACTCTACGTTGCGAATCTTGGCGACTCCCGAGCTGTGTTGGGGAGGCTTGTTCGGTCGACGGGGGAAGTTCTTCCCATTCAGCTGTCGTCGGAGCACAATGTAAGCATACAATCAGTCCGCCAGGAGATGCAGTCTATGCACCCAGATGACTCCCAGATAGTAGTGTTGAAGCATAACGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCGATTGGAGACGTATATCTCAAAAAGCCAGAGTTTAACCGGGAGCCTTTGTATACTAAGTTTCGTCTCCGAGAGCCCTTCAGTAAGCCTATTCTGAGCTCAGAACCTGCGGTCTCTGTGCATGAACTCGATCCAAACGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTAAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCGGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCAGACTTGAAGAAGATTGATCGTGGGGTTCGGCGTCATTTTCACGATGACATAACGGTGATAGTCGTGTTTCTGGGTTCAAGCAGAGGGGAAAGAAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAGTGAAGCTATATGCGAAGTCGGGGCTCAACACTGCCCCTTCGTAA 1173 49.45 MLSSLMNLLRACWQPCADRHLRRRGGGGSDSVGCQDGLLWYKDHGHDINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICDNLFQHLKVFATEEKAMSVNVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVAVICNGKLYVANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSMHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYTKFRLREPFSKPILSSEPAVSVHELDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLGSSRGERSPVLSVRGGGVKLYAKSGLNTAPS 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9468656 9470863 + CmaCh16G012520.1 Cma16g01252 311850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01252 390 SMART PP2C_4 43 357 IPR001932 -
Cma16g01252 390 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Cma16g01252 390 SUPERFAMILY PP2C-like 64 360 IPR036457 -
Cma16g01252 390 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 383 - -
Cma16g01252 390 Gene3D - 41 366 IPR036457 -
Cma16g01252 390 Pfam Protein phosphatase 2C 84 328 IPR001932 -
Cma16g01252 390 ProSiteProfiles PPM-type phosphatase domain profile. 51 359 IPR001932 -
Cma16g01252 390 CDD PP2Cc 83 359 IPR001932 -
Cma16g01252 390 PANTHER ALPHABET, ISOFORM E-RELATED 6 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00403 Cma-Chr7:1743228 Cma16g01252 Cma-Chr16:9468656 0 dispersed
Cma11g01366 Cma-Chr11:9047629 Cma16g01252 Cma-Chr16:9468656 0 dispersed
Cma16g01252 Cma-Chr16:9468656 Cma19g00750 Cma-Chr19:7473265 0 dispersed
Cma16g01252 Cma-Chr16:9468656 Cma03g00656 Cma-Chr3:5525611 0 wgd
Cma16g01252 Cma-Chr16:9468656 Cma06g00132 Cma-Chr6:683929 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01252 K01102 - csv:101220137 703.745