Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01253 ATGGATTTCATCGCGAATCCATTTCGATTTTCTTCATCTTCGTCGCCTTCGTTTGGTAATCTCTTTGAGAGAGTTCGAGACATTTGTTGCTATGCGGTTTCTGCGATTCTTGGCAACGTCTTGTCCGCGATCTTCACTTTTTTCTTCGCCCTAGTGGGGACTTTGCTTGGGGCCATGACTGGCGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCGGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGAATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTTGTTCGAGAACGGATCGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTACAGAGACGAGCTTTGACGACATCCCGAACATCTTCGATACGAGTAGCGCAAAAGGATTGCCTGGGGACTCGGTCGAGAAAATCCCCAAGATCTTAGTATCTAAGAACAACAGCGTAGATGCTTACGGCGAGCGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAACTAGGAGAGACTGTAAGAAGTTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGTAGAAGGGATCTGTAA 708 46.19 MDFIANPFRFSSSSSPSFGNLFERVRDICCYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKILVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 9472729 9474615 - CmaCh16G012530.1 Cma16g01253 311851
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01253 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 9 235 - -
Cma16g01253 235 SUPERFAMILY RING/U-box 177 235 - -
Cma16g01253 235 SMART ring_2 190 231 IPR001841 -
Cma16g01253 235 Pfam Ring finger domain 190 232 IPR001841 -
Cma16g01253 235 CDD RING-H2_PA-TM-RING 189 232 - -
Cma16g01253 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Cma16g01253 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Cma16g01253 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Cma16g01253 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 235 IPR044523 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01253 Cma-Chr16:9472729 Cma03g01117 Cma-Chr3:7611890 1.37E-15 dispersed
Cma16g01253 Cma-Chr16:9472729 Cma06g00134 Cma-Chr6:688196 4.64E-158 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01253 - - csv:101220376 457.988