Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma16g01253 | ATGGATTTCATCGCGAATCCATTTCGATTTTCTTCATCTTCGTCGCCTTCGTTTGGTAATCTCTTTGAGAGAGTTCGAGACATTTGTTGCTATGCGGTTTCTGCGATTCTTGGCAACGTCTTGTCCGCGATCTTCACTTTTTTCTTCGCCCTAGTGGGGACTTTGCTTGGGGCCATGACTGGCGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCGGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCCATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGAATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTTGTTCGAGAACGGATCGGTCCAGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTACAGAGACGAGCTTTGACGACATCCCGAACATCTTCGATACGAGTAGCGCAAAAGGATTGCCTGGGGACTCGGTCGAGAAAATCCCCAAGATCTTAGTATCTAAGAACAACAGCGTAGATGCTTACGGCGAGCGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAACTAGGAGAGACTGTAAGAAGTTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGTAGAAGGGATCTGTAA | 708 | 46.19 | MDFIANPFRFSSSSSPSFGNLFERVRDICCYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKILVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 9472729 | 9474615 | - | CmaCh16G012530.1 | Cma16g01253 | 311851 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma16g01253 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 9 | 235 | - | - | |
| Cma16g01253 | 235 | SUPERFAMILY | RING/U-box | 177 | 235 | - | - | |
| Cma16g01253 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Cma16g01253 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Cma16g01253 | 235 | CDD | RING-H2_PA-TM-RING | 189 | 232 | - | - | |
| Cma16g01253 | 235 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
| Cma16g01253 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Cma16g01253 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Cma16g01253 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 9 | 235 | IPR044523 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma16g01253 | Cma-Chr16:9472729 | Cma03g01117 | Cma-Chr3:7611890 | 1.37E-15 | dispersed | |
| Cma16g01253 | Cma-Chr16:9472729 | Cma06g00134 | Cma-Chr6:688196 | 4.64E-158 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma16g01253 | - | - | csv:101220376 | 457.988 |