Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01259 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCCGAGCCTCTGACTCCTCCTCGTCCCAAGCGAACCCGAGGCATCATCGCCAGAAGCTTGATGTCTACAACGAAGTGCTCCGACGAATCCAGGAATCCAATTTTCATGAGGCCAATTTACCTGGATTTGATGATCAGCTATGGCTTCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCGGAAGATGTACTCATGCATAAGAGATTACTTCAATTGGCTGTAGACCCTGCTAACCGACCCGCATTCGACGTTCGTTCTGTGCAGGTTTATCCTTCTCCTAATGAAAACTTTATCAATTCTTCTTTTCTGGATTCTTCAATGACGGAAGATGCTCAGAGCTCTTTGAATTATTCTAACAGACAAGGGAACCATCCACCTCCAACCTTTGGTTCTTCTCCTAATCTTGAAGCATTTGCAATTCAGGCCTGCAAGTATGGGGTCGAAGATAGGGACAGTGCCCTAAACATGACACCCTGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAATTGACAAGCCTAAACTCCTTAGTGAGTTAACTTGCTTCCTAGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGCTTTTGTCATCGATGGATGGCCTTATGAGGAAACCGAGGAGCTGAAAAGGGCATTAGAAAAAGAAATTTTAAGTTTTAAGGAACAGTGTTGGTCAGAAAAGCAGCCGAGTCCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTTGTTGTGTTGAGATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCGTATGGGGACCTGTATCGGGGCACTTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTCTTAGCGAAGAGATGGTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGAGCATGTACCAAACCTCCAAACCTCTGCATCGTGACGGAGTTTATGTCGAGAGGAAGTCTATATGACTTCCTTCACAAGCAAAGAGGTGTATTTAACCTTCCATCTTTACTTAAAGTAGCCATTAACATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTTAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTAATGACAGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCACAAGGTAGATGTTTTCAGCTTTGGAATAGCTTTATGGGAGCTTTTAACCGGAGATATTCCTTACTCATCCATGACCCCATTACAAGCAGCTGTTGGCGTAGTCCAGAAGAGACTGCGACCTACAATACCGAAGAATGCTCATCCCGTTGTTGCTGAACTGCTTGAAAGATGCTGGAGGCAGGACCCAACCGAACGGCCAAACTTCTCTGAAATTTTAGAGATCCTCAAACAGATAGCTGAGCAGGTCAAAAACAACGGGGAAAATCAACGCAAGAAGGATAAAATATCCAGTGTGTTCTTCTCAGCCTTCAAGAGGGAGCACCACTGA 1740 43.56 MPIEDDVESCGSRASDSSSSQANPRHHRQKLDVYNEVLRRIQESNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLMHKRLLQLAVDPANRPAFDVRSVQVYPSPNENFINSSFLDSSMTEDAQSSLNYSNRQGNHPPPTFGSSPNLEAFAIQACKYGVEDRDSALNMTPCFSRPMHEITFATIDKPKLLSELTCFLADVGLNIQEAHAFSSVDGFSLDAFVIDGWPYEETEELKRALEKEILSFKEQCWSEKQPSPALGKHNQNRVESFPCCVEIPTDGTDVWEIDTRQLKFENKVGSGSYGDLYRGTYCSQEVAIKVLRPERLSEEMVKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSLYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKVDVFSFGIALWELLTGDIPYSSMTPLQAAVGVVQKRLRPTIPKNAHPVVAELLERCWRQDPTERPNFSEILEILKQIAEQVKNNGENQRKKDKISSVFFSAFKREHH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9497182 9503319 + CmaCh16G012590.1 Cma16g01259 311857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01259 579 CDD STKc_MAP3K-like 303 546 - -
Cma16g01259 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
Cma16g01259 579 SUPERFAMILY ACT-like 182 248 IPR045865 -
Cma16g01259 579 SUPERFAMILY Protein kinase-like (PK-like) 274 546 IPR011009 -
Cma16g01259 579 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 564 - -
Cma16g01259 579 Coils Coil 543 563 - -
Cma16g01259 579 CDD ACT_TyrKc 182 249 - -
Cma16g01259 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Cma16g01259 579 Coils Coil 234 254 - -
Cma16g01259 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Cma16g01259 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672|GO:0006468
Cma16g01259 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672|GO:0006468
Cma16g01259 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672|GO:0006468
Cma16g01259 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Cma16g01259 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 564 - -
Cma16g01259 579 ProSiteProfiles ACT domain profile. 184 259 IPR002912 -
Cma16g01259 579 SMART serkin_6 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01259 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cma16g01259 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672|GO:0006468
Cma16g01259 579 Gene3D Transferase(Phosphotransferase) domain 1 376 577 - -
Cma16g01259 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01259 579 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01359 Cma-Chr11:8997615 Cma16g01259 Cma-Chr16:9497182 0 dispersed
Cma16g01259 Cma-Chr16:9497182 Cma19g00758 Cma-Chr19:7517998 0 dispersed
Cma16g01259 Cma-Chr16:9497182 Cma06g00139 Cma-Chr6:708474 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69212 PF07714 PK_Tyr_Ser-Thr 1.80E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01259 - - csv:101220844 1060.83