Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01265 ATGTCTTCGGAGGAAGGTGATGTTTGTGAAACTCCGGAAAGTCGAGTGGAAGAGGGGACAATGCCTGAGGAGCTGAAATCCGGAGTGAACCATGAGGGAAATGGCCGTGTTGTAGTGGAAGATAGTTTTGCTGATGGAGACAAATGCTCCGATGATCATGACGAGCTTGTTCAATTGGTTATCGACATGAAATCTCAAAATGAATACTTAAAGTCTCAGTTGGAAAGCATGAAAAATCTGCAAAATGTGGAGAATGTACCGGAACGAGAAGAAGAAATTGGTTCGAGAGATGGAGAAAGCGTTGCTTTGAAAGAACTTCAACAAAGAGTTGAGTCTTTGAGTAAAGAACTTTCGGAGGAAAAGCAGACACGAGGTGCAGCTGAGCAAGCTCTGCAGCATCTCCAAGAAGCCCACTCAGAAGCAGATGCAAAAGTTCATGAACTTTCTGCAAAGCTCATCGAAGCTCAACAGAAGTTGGAGCAAGAAATAAAAGAACGTGATGAGAAATATTCTGACCTGGACTCAAAATTTAGCAGGCTACACAAACGAGCTAAACAGCGTATTCAAGATATCCAAAAGGAAAAAGATGAACTTGAGGCTCGATTTCGTGATGTTAATGAAAGAGCAGAGCGTGCCACATCCCAGCAGACTGCACTTCAACAAGAAATAGAACGCACTCGGCAACAAGCCAATGAAGCATTGAAAGCAATAGATGCAGAGAGACAACAATTAAGGAGTGCAAACAATAAGCTTCGAGACAACATAGAAGAATTGCGACACTCATTGCAGCCTAAAGAAAGTGCAATTGAGGCATTGCAGCAATCCCTTGCGGAGAAGGACCAGATGTTGGAAGACATGAAGAATATGCTTCAAGCTGCTGAGGAGAAAAGGCAAGCTTCACTAGCTGACCTTTCTGCAAAACATCAGAAGAGCTTGGAGAGATTCCAAATGCAACTTTCTGATGCTTTATCTGATAGAAATAAAGCTACAGAAACTATTTCTTCCCTACAGGAATTAGTTGCAGAGAAAGAATCAAAGATTGCAGAGATGGACGCAGCATCAAGTGGTGAGGCAGCCAGACTTAGAGCTACTGTGGAAACTGTAAAAGGAGAGCTTGCTCACCTCAGAAATGAAAATGAGAAAGAAAAGGAGACATGGCAAGCTGCTTTGGAGGCACTTAAAATGAAGTTAGAGATCGCTGAGAGCAATTGCATACGTGCTGAAATTGAAGCTGCTAAAATGAGGAGTCAGCTGGAATTGGAAGTTTCTGCAAAATCCCGGATGTTGAGTGCAAGAGATGCTGAACTACTGACTGTCAAAGAGGAGATGAATCGCCTTAAAAGTGAATTTTCTTCGTACAAGGTTCGTGCTCATGCACTTCTTCAGAAGAAGGAAGCAGAGCTAGAGGCTGCTGTGGACTCTGACCAAATTAAAGCCCTTGAGGAAGCGCTGAAGGAAGCTGAAAAGGAAATCACGTTGGCATATGCTGAAAAGGATCGGGTTCAGCTAGAACTTCAAAATGCTTTGGCAAATCATGAAAAAGAACTCAGAGAAAGAGATTCAGCCCTCAATGACGCTGAGCAAAATATTAAGAGCCTAGAAAAGAGGCTTGAATCTGCTAATTTGCACCTTCATTCAGAAAAGGAAGCTTGGGAACAAAGTCTCCAAAACTTGGAGGAATCATGGCGAATTAGATGTGAAGCATTGAAATCTCAGTTTGAAGAATCCTCTAGGCAAGATGTAGAAAAGGAATTTGAGGAGCTGAAACAAGGGTACAAAAGATTGAAGGCAAGTATATATATATATTTTTTCTTCTCTTGTTTTGAAGAGCATAATTCATTCCGTGATCTTGCTGATAGAATGATCGAGGAAAAGGATACAGAAATTTCTAGGCTTTTAGATGATAACAAGAATCTTCGACGATCTTTGGAATCAAAACCTCCCGCAGGTCAAGTTGGTAATACTGCAGTCACTCAAAAACAGGACTCGTCAAATTTGAATGCCTCCAATGCAGAACAACAGATTCTGATTTTAGCAAGGCAGCAGGCTCAGAGAGAAGAACAACTAGCCCAATCACAGCGGCATATTGTAGCTCTTCAAGAAGAACTTGAGGAGCTCGAACGTGAGAATCGTCTGCATAGCCAACAGCAAGCAATGCTGAAGGCTGAGCTTCGTGATATGGAAAGATCACAGAAGAGGGAGGGTGTTGACATGACGTATCTGAAGAATGTCATCTTGAAGCTCCTCGAAACCGGTGAAGTAGAAGCTCTGCTACCTGTGGTTGCCATGCTCCTCCAGTTTAGCCCAGAAGAGGTTGTATATGCACTCTCTGCTCCTCTATCCTGTGAATTCGTAGTAGATATTGTGTTCTACTGTCTTAATTGTAGCCAAACATATAGAGCAGTCCAAAGAACCCATGGAAAGAAGGAAAACCATTGTTAG 2442 42.42 MSSEEGDVCETPESRVEEGTMPEELKSGVNHEGNGRVVVEDSFADGDKCSDDHDELVQLVIDMKSQNEYLKSQLESMKNLQNVENVPEREEEIGSRDGESVALKELQQRVESLSKELSEEKQTRGAAEQALQHLQEAHSEADAKVHELSAKLIEAQQKLEQEIKERDEKYSDLDSKFSRLHKRAKQRIQDIQKEKDELEARFRDVNERAERATSQQTALQQEIERTRQQANEALKAIDAERQQLRSANNKLRDNIEELRHSLQPKESAIEALQQSLAEKDQMLEDMKNMLQAAEEKRQASLADLSAKHQKSLERFQMQLSDALSDRNKATETISSLQELVAEKESKIAEMDAASSGEAARLRATVETVKGELAHLRNENEKEKETWQAALEALKMKLEIAESNCIRAEIEAAKMRSQLELEVSAKSRMLSARDAELLTVKEEMNRLKSEFSSYKVRAHALLQKKEAELEAAVDSDQIKALEEALKEAEKEITLAYAEKDRVQLELQNALANHEKELRERDSALNDAEQNIKSLEKRLESANLHLHSEKEAWEQSLQNLEESWRIRCEALKSQFEESSRQDVEKEFEELKQGYKRLKASIYIYFFFSCFEEHNSFRDLADRMIEEKDTEISRLLDDNKNLRRSLESKPPAGQVGNTAVTQKQDSSNLNASNAEQQILILARQQAQREEQLAQSQRHIVALQEELEELERENRLHSQQQAMLKAELRDMERSQKREGVDMTYLKNVILKLLETGEVEALLPVVAMLLQFSPEEVVYALSAPLSCEFVVDIVFYCLNCSQTYRAVQRTHGKKENHC 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9654863 9667936 - CmaCh16G012650.1 Cma16g01265 311863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01265 813 Coils Coil 358 417 - -
Cma16g01265 813 MobiDBLite consensus disorder prediction 1 35 - -
Cma16g01265 813 Coils Coil 326 353 - -
Cma16g01265 813 ProSiteProfiles GRIP domain profile. 731 778 IPR000237 -
Cma16g01265 813 Pfam GRIP domain 735 771 IPR000237 -
Cma16g01265 813 Gene3D - 99 265 - -
Cma16g01265 813 Coils Coil 463 561 - -
Cma16g01265 813 Coils Coil 96 176 - -
Cma16g01265 813 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 62 771 - -
Cma16g01265 813 Coils Coil 682 723 - -
Cma16g01265 813 Coils Coil 269 303 - -
Cma16g01265 813 MobiDBLite consensus disorder prediction 641 665 - -
Cma16g01265 813 Coils Coil 622 642 - -
Cma16g01265 813 Coils Coil 181 261 - -
Cma16g01265 813 Coils Coil 578 598 - -
Cma16g01265 813 MobiDBLite consensus disorder prediction 8 25 - -
Cma16g01265 813 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 62 771 - -
Cma16g01265 813 MobiDBLite consensus disorder prediction 648 665 - -
Cma16g01265 813 SMART 1grip 734 778 IPR000237 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01265 - - - csv:101223202 1272.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01265 Cma-Chr16:9654863 Cma06g00145 Cma-Chr6:726230 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01265 Cma_Chr16 FPKM 13.195659 12.667953 10.415724 10.91612 14.199495 12.703353 11.978606 20.366758 19.302572 19.462433