Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01271 ATGGCTGTTGGCGATGGAGCTGTGTCCGCTGCTCCCTATACGACCTCTATCGATGGAATCAAAGTCAACGTCAACATTCGATGCTCCAATGGTTCCAAGTTTTCTGTTCTTGTTAACCTTGATTCTACCGTTGGATCCTTTAAATCGATTCTTGCCGAACAGAGCGAGGTTCCGCCCGATCAGCAGCGCCTCATTTACAAGGGTCGGATTTTGAAAGACGATCAAACCCTACAAAGCTACGGGTTAGAGGCAGATCACACCGTTCATTTGGTTCGTGGATCGGCACCTGCTGCCCCGCCGACCAATCCTGCTACTGCGCCCAATGCTGGCGGTCCGAACACTTCTTCGAGTAACGCAAGAAGTGTTGGACCAAATGAAGGTGGAGCTCTCGGGGCAGGACTTGGTTTGGAAGCTTCCCTATTTCCTGAACTTGGTTTCGATGGGCTTGGTGCCACTGGTGGCTTGTTTGGGGCTGGCCTTCCCGATTTTGAACAGGTGCAGCAGCAGCTGACCCGCGATCCAAACATAATGAGAGAAATAATGAACATGCCTGCCATACAAAACATCATGAATAATCCAGATATCATGAGGAACTTGATCATGAACAATCCTCAAATGCGTGAGATAATGGATCGTAATCCTGAGCTCGCACACATTCTCAATGATCCCAGTACTCTTCGGCAGACACTTGAAACTGCAAGAAATCCCGAGCTTATGCGGGAGATGATGCGGAATACTGATAGAGCAATGAGCAACATTGAGTCTTCCCCTGAAGGTTTTAATATGCTTAGGCGCATGTATGAAACTGTTCAAGAGCCATTTCTAAACGCAACAACTATGTCTGGAACTGCTGGAAATGATGGCTCAAACCCCTTCGCCGCACTTTTGGGGACGGGTGGGGGTGTGACCAATAATGCAACATCCAATTTATCTACTACTACTAATGATACGACTAATGGTTCTCCTTCTCCAAATACAAACCCACTTCCAAACCCATGGTCCCCTGCTAGCACAGCTGGCGGTACCCAAACTAACTCTACAAGGTCGAATCCCACTCCAAATGTTAGTGCTCAAGCTCCCACTGGTTTAGCTGGGCTTGGCCTTCCAAATCTTGAGGGCATGTTGGGTGCAACACCAGATGCCACTGGTTTGAATCAGTTGATGCAAAACCCAGCTATTTCACAGATGATGCAAAGTGTTATGTCAAACCCTCAATATGTGAACCAGATTCTTGGTCTCAACCCTCAATTGCGCGGCTTGCTAGATTCCAATCCTCAGCTCAGAGAGATGATGCAGAATCCTGAATTTCTACGTCAGTTGACCTCCCCCGAGACAATGCAGCAAATGTTTACGTTGCAGCAACAACTTCTGTCACAGCTTGGTCGCCAGCCCACCCTAAACCAAGGTCAGACCGGTGGAAGCACAGGAGCTGCGAACAATGCGGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGTGCTGTACCGCCGGAAGAACTGTATTCTACACAGCTTACACAGCTACAAGAAATGGGATTCATTGACAGACAGGAGAACATACGAGCACTGATTGCTACTGCAGGAAATATCCACGCTGCAGTTGAACGATTACTGGGGAATTCGGGGCAGTAG 1635 48.32 MAVGDGAVSAAPYTTSIDGIKVNVNIRCSNGSKFSVLVNLDSTVGSFKSILAEQSEVPPDQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGSAPAAPPTNPATAPNAGGPNTSSSNARSVGPNEGGALGAGLGLEASLFPELGFDGLGATGGLFGAGLPDFEQVQQQLTRDPNIMREIMNMPAIQNIMNNPDIMRNLIMNNPQMREIMDRNPELAHILNDPSTLRQTLETARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMSGTAGNDGSNPFAALLGTGGGVTNNATSNLSTTTNDTTNGSPSPNTNPLPNPWSPASTAGGTQTNSTRSNPTPNVSAQAPTGLAGLGLPNLEGMLGATPDATGLNQLMQNPAISQMMQSVMSNPQYVNQILGLNPQLRGLLDSNPQLREMMQNPEFLRQLTSPETMQQMFTLQQQLLSQLGRQPTLNQGQTGGSTGAANNAGLEMLMNMFGGLGAVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNIHAAVERLLGNSGQ 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9682839 9689000 + CmaCh16G012710.1 Cma16g01271 311869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01271 544 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 500 541 IPR015940 -
Cma16g01271 544 SMART CBM 414 449 IPR006636 -
Cma16g01271 544 SMART CBM 359 410 IPR006636 -
Cma16g01271 544 SMART CBM 203 242 IPR006636 -
Cma16g01271 544 SMART CBM 153 190 IPR006636 -
Cma16g01271 544 MobiDBLite consensus disorder prediction 304 324 - -
Cma16g01271 544 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
Cma16g01271 544 CDD UBA_PLICs 502 540 - -
Cma16g01271 544 CDD Ubl_Dsk2p_like 22 94 - -
Cma16g01271 544 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Cma16g01271 544 ProSitePatterns Ubiquitin domain signature. 48 73 IPR019954 -
Cma16g01271 544 Gene3D - 14 105 - -
Cma16g01271 544 SUPERFAMILY Ubiquitin-like 19 109 IPR029071 -
Cma16g01271 544 SUPERFAMILY UBA-like 498 540 IPR009060 GO:0005515
Cma16g01271 544 MobiDBLite consensus disorder prediction 332 359 - -
Cma16g01271 544 Gene3D - 198 256 - -
Cma16g01271 544 PRINTS Ubiquitin signature 74 95 IPR019956 -
Cma16g01271 544 PRINTS Ubiquitin signature 53 73 IPR019956 -
Cma16g01271 544 Gene3D - 495 542 - -
Cma16g01271 544 SMART uba_6 502 540 IPR015940 -
Cma16g01271 544 MobiDBLite consensus disorder prediction 107 123 - -
Cma16g01271 544 Pfam UBA/TS-N domain 502 538 IPR015940 -
Cma16g01271 544 SMART ubq_7 22 93 IPR000626 GO:0005515
Cma16g01271 544 PANTHER UBIQUILIN 15 544 - -
Cma16g01271 544 MobiDBLite consensus disorder prediction 304 364 - -
Cma16g01271 544 MobiDBLite consensus disorder prediction 93 126 - -
Cma16g01271 544 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 15 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01271 K04523 UBQLN, DSK2; ubiquilin - csv:101203166 880.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01337 Cma-Chr11:8859880 Cma16g01271 Cma-Chr16:9682839 0 dispersed
Cma16g01271 Cma-Chr16:9682839 Cma19g00792 Cma-Chr19:7683142 0 dispersed
Cma16g01271 Cma-Chr16:9682839 Cma06g00148 Cma-Chr6:746776 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0890 Cone12ag0861 . . . . . . . . . . . . . . . . . Cma16g01271 . . . . . . . . . . . . . . . . . . . Lsi07g01060 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013056 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01271 Cma_Chr16 FPKM 59.384705 61.985737 44.685707 43.857151 32.328899 38.135593 30.95233 67.391823 67.026009 60.437305