Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01272 ATGGAGCACTTACGATTGTACTTGCACCAAGTTTCACATTGTGTGGATTTAGAAGAAAAGTTATTAACTCCTCTTTGCCACCGCTGCCTTTGTTTGAAAAAAAATCTATTGGATTCTGTATGGGACAACATCCGCAAGTTTATGCACTCTCCAACTGATAGATTTAAATTCAACACCATGTTCAATGTTCAATTGCTGCTGACAAAAGGACAAGAAGACCATCAATCTCTGACACAAATGAAAATCACCCTCCTCCTTCACTGTCAAAAGCTGCAGAATTTCCGACATCTTCTTTTTTTTTTTTTTAATCTCCGCCGTGATGTCCACCGCCGGCTGCCTGCCAGAGCTAACTCAGACTGGTCACCTCTCCTCCACCGGTCCCTCCGAAATTTTGGAGCAGAGATTATGATGGAGTGGGAAAAGGCTGAGCACCAACCTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTATGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACCCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAAATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACTTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGGACTATAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAAGGACCCTGA 1239 46.57 MEHLRLYLHQVSHCVDLEEKLLTPLCHRCLCLKKNLLDSVWDNIRKFMHSPTDRFKFNTMFNVQLLLTKGQEDHQSLTQMKITLLLHCQKLQNFRHLLFFFFNLRRDVHRRLPARANSDWSPLLHRSLRNFGAEIMMEWEKAEHQPPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEGNEQLTGKIETPEDYSLYQQAEGYSMTEGP 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9689343 9695169 - CmaCh16G012720.1 Cma16g01272 311870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01272 412 Gene3D - 237 301 - -
Cma16g01272 412 Pfam Homeodomain 235 295 IPR001356 GO:0003677
Cma16g01272 412 MobiDBLite consensus disorder prediction 293 325 - -
Cma16g01272 412 ProSiteProfiles 'Homeobox' domain profile. 231 296 IPR001356 GO:0003677
Cma16g01272 412 PANTHER - 135 409 - -
Cma16g01272 412 SUPERFAMILY Homeodomain-like 231 299 IPR009057 -
Cma16g01272 412 CDD homeodomain 235 297 IPR001356 GO:0003677
Cma16g01272 412 PANTHER WUSCHEL-RELATED HOMEOBOX 13 135 409 IPR044559 GO:0003700
Cma16g01272 412 SMART HOX_1 233 300 IPR001356 GO:0003677
Cma16g01272 412 MobiDBLite consensus disorder prediction 310 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01272 - - - csv:101203410 521.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00047 Cma-Chr9:205924 Cma16g01272 Cma-Chr16:9689343 1.25E-87 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma11g00311 Cma-Chr11:1543460 1.74E-13 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma06g00150 Cma-Chr6:751766 1.58E-172 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36613 PF00046 Homeodomain 1.70E-18 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01272 Cma_Chr16 FPKM 24.884592 27.869175 37.585255 36.027409 15.950232 17.736322 16.340406 35.304756 37.074493 35.829182