Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01272 ATGGAGCACTTACGATTGTACTTGCACCAAGTTTCACATTGTGTGGATTTAGAAGAAAAGTTATTAACTCCTCTTTGCCACCGCTGCCTTTGTTTGAAAAAAAATCTATTGGATTCTGTATGGGACAACATCCGCAAGTTTATGCACTCTCCAACTGATAGATTTAAATTCAACACCATGTTCAATGTTCAATTGCTGCTGACAAAAGGACAAGAAGACCATCAATCTCTGACACAAATGAAAATCACCCTCCTCCTTCACTGTCAAAAGCTGCAGAATTTCCGACATCTTCTTTTTTTTTTTTTTAATCTCCGCCGTGATGTCCACCGCCGGCTGCCTGCCAGAGCTAACTCAGACTGGTCACCTCTCCTCCACCGGTCCCTCCGAAATTTTGGAGCAGAGATTATGATGGAGTGGGAAAAGGCTGAGCACCAACCTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTATGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACCCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAAATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACTTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGGACTATAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAAGGACCCTGA 1239 46.57 MEHLRLYLHQVSHCVDLEEKLLTPLCHRCLCLKKNLLDSVWDNIRKFMHSPTDRFKFNTMFNVQLLLTKGQEDHQSLTQMKITLLLHCQKLQNFRHLLFFFFNLRRDVHRRLPARANSDWSPLLHRSLRNFGAEIMMEWEKAEHQPPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEGNEQLTGKIETPEDYSLYQQAEGYSMTEGP 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9689343 9695169 - CmaCh16G012720.1 Cma16g01272 311870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01272 412 Gene3D - 237 301 - -
Cma16g01272 412 Pfam Homeodomain 235 295 IPR001356 GO:0003677
Cma16g01272 412 MobiDBLite consensus disorder prediction 293 325 - -
Cma16g01272 412 ProSiteProfiles 'Homeobox' domain profile. 231 296 IPR001356 GO:0003677
Cma16g01272 412 PANTHER - 135 409 - -
Cma16g01272 412 SUPERFAMILY Homeodomain-like 231 299 IPR009057 -
Cma16g01272 412 CDD homeodomain 235 297 IPR001356 GO:0003677
Cma16g01272 412 PANTHER WUSCHEL-RELATED HOMEOBOX 13 135 409 IPR044559 GO:0003700
Cma16g01272 412 SMART HOX_1 233 300 IPR001356 GO:0003677
Cma16g01272 412 MobiDBLite consensus disorder prediction 310 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00047 Cma-Chr9:205924 Cma16g01272 Cma-Chr16:9689343 1.25E-87 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma11g00311 Cma-Chr11:1543460 1.74E-13 dispersed
Cma16g01272 Cma-Chr16:9689343 Cma06g00150 Cma-Chr6:751766 1.58E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36613 PF00046 Homeodomain 1.70E-18 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01272 - - csv:101203410 521.161