Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01272 | ATGGAGCACTTACGATTGTACTTGCACCAAGTTTCACATTGTGTGGATTTAGAAGAAAAGTTATTAACTCCTCTTTGCCACCGCTGCCTTTGTTTGAAAAAAAATCTATTGGATTCTGTATGGGACAACATCCGCAAGTTTATGCACTCTCCAACTGATAGATTTAAATTCAACACCATGTTCAATGTTCAATTGCTGCTGACAAAAGGACAAGAAGACCATCAATCTCTGACACAAATGAAAATCACCCTCCTCCTTCACTGTCAAAAGCTGCAGAATTTCCGACATCTTCTTTTTTTTTTTTTTAATCTCCGCCGTGATGTCCACCGCCGGCTGCCTGCCAGAGCTAACTCAGACTGGTCACCTCTCCTCCACCGGTCCCTCCGAAATTTTGGAGCAGAGATTATGATGGAGTGGGAAAAGGCTGAGCACCAACCTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTATGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACCCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAAATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGCGCTCGATCGAAGAGGAAGCAGCAAAGCACAGCACCCGCCTATGGCGAATCAGAAGTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACTTCTGCACCTTTGGGGGATGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAACTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGGACTATAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAAGGACCCTGA | 1239 | 46.57 | MEHLRLYLHQVSHCVDLEEKLLTPLCHRCLCLKKNLLDSVWDNIRKFMHSPTDRFKFNTMFNVQLLLTKGQEDHQSLTQMKITLLLHCQKLQNFRHLLFFFFNLRRDVHRRLPARANSDWSPLLHRSLRNFGAEIMMEWEKAEHQPPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKTARSFSQMSFYEGNEQLTGKIETPEDYSLYQQAEGYSMTEGP | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9689343 | 9695169 | - | CmaCh16G012720.1 | Cma16g01272 | 311870 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01272 | 412 | Gene3D | - | 237 | 301 | - | - | |
Cma16g01272 | 412 | Pfam | Homeodomain | 235 | 295 | IPR001356 | GO:0003677 | |
Cma16g01272 | 412 | MobiDBLite | consensus disorder prediction | 293 | 325 | - | - | |
Cma16g01272 | 412 | ProSiteProfiles | 'Homeobox' domain profile. | 231 | 296 | IPR001356 | GO:0003677 | |
Cma16g01272 | 412 | PANTHER | - | 135 | 409 | - | - | |
Cma16g01272 | 412 | SUPERFAMILY | Homeodomain-like | 231 | 299 | IPR009057 | - | |
Cma16g01272 | 412 | CDD | homeodomain | 235 | 297 | IPR001356 | GO:0003677 | |
Cma16g01272 | 412 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 135 | 409 | IPR044559 | GO:0003700 | |
Cma16g01272 | 412 | SMART | HOX_1 | 233 | 300 | IPR001356 | GO:0003677 | |
Cma16g01272 | 412 | MobiDBLite | consensus disorder prediction | 310 | 325 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00047 | Cma-Chr9:205924 | Cma16g01272 | Cma-Chr16:9689343 | 1.25E-87 | dispersed | |
Cma16g01272 | Cma-Chr16:9689343 | Cma11g00311 | Cma-Chr11:1543460 | 1.74E-13 | dispersed | |
Cma16g01272 | Cma-Chr16:9689343 | Cma06g00150 | Cma-Chr6:751766 | 1.58E-172 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36613 | PF00046 | Homeodomain | 1.70E-18 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01272 | - | - | csv:101203410 | 521.161 |