Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01278 ATGGGAAATTGTTTACATTCTTCAACTCCTCGTGCTAGTTCCATTAGCAGCCAGACGCTATCTTCTACTCCAGGGACATCGAGCAATCACAGCAAGAGCGTAGGGTTTTCAGGTACCAATAGCACCGCCGGCGCAAGTCTATTTTCAGAGGCGGCGAGCGTGGATGTGAATGAGCGCTATCCGAACGGGAAAATCCTTGACCAACCAAACTTGAAGGAGTTCAGCTTCGCTGAGCTGAAACTCGTTACCAAAAACTTCAGACCTGAATCCTTGATCGGTCAGGGAGGTTTTGGGAAGGTGTATAAGGGCTGGGTTGATGAGAAGACGCTGGCTCCTTCTAAGAGCAATTCTGGAATGGTGATTGCCATTAAGAAATTAAACACAGAAAGTGTCCAAGGTTTTCAGGAGTGGCAGGCTGAAGTGAACTTTTTAGGACGGTTGAATCATCCAAATCTTGTCAAATTATTGGGTTTCTGCTGGGATGATGAAGAATTGCTTCTTGCATATGAATTCATGCCCAGGGGAAGCTTGGAAAACCATCTCTTTGGAAGGCGTTCTTCCATAGAACCCCTTTCTTGGGAAAGAAGGCTCAAGATTGCCATTGGCGCAGCTAGAGGCTTGGCTTTCTTGCATTCCGCAGAAAAAGAAGTTATTTACAGAGATTTTAAAGCGTCCAACATACTTCTAGATATGAATTACAACTCAAAAATCTCGGATTTCGGCTTGGCAAGATTGGGGCCTGCAGGTGAAAAATCACATGTAACAACAAGAATTATGGGCACGTACGGTTACGTTGCCCCGGAATACGTTAGTACAGGTCATCTATACGTGAAGAGCGACGTTTATGGGTTTGGTGTGGTGCTGCTCGAGATTATGACAGGCTTGCGAGCACATGATCCGAATAGGAGCTACGAACAGCGCAATCTGGTCGAATGGGCTAAGCCACGCTTGGAGAAGAAAAAAAAGATCAAAAGGTTAATGGATGCAAGAATAGAAGGTCAATATTCATTGAGAGCAGCCGCTCTAGTGGGAGATCTTACTCTAAAATGCCTGGAAACAGATCCTAGAAAGCGCCCCTCCATGCAAGAAGTTCTTGAGGCATTGGAACAGGTCGAAGAATCGAGGGAAAAACCGAAAGAGTCGAAGACTAGCAACACGCAGTCTAAACAGCTTCATCAAAAACAGGCAAACAATTCATCAGCTAAATGA 1209 45.24 MGNCLHSSTPRASSISSQTLSSTPGTSSNHSKSVGFSGTNSTAGASLFSEAASVDVNERYPNGKILDQPNLKEFSFAELKLVTKNFRPESLIGQGGFGKVYKGWVDEKTLAPSKSNSGMVIAIKKLNTESVQGFQEWQAEVNFLGRLNHPNLVKLLGFCWDDEELLLAYEFMPRGSLENHLFGRRSSIEPLSWERRLKIAIGAARGLAFLHSAEKEVIYRDFKASNILLDMNYNSKISDFGLARLGPAGEKSHVTTRIMGTYGYVAPEYVSTGHLYVKSDVYGFGVVLLEIMTGLRAHDPNRSYEQRNLVEWAKPRLEKKKKIKRLMDARIEGQYSLRAAALVGDLTLKCLETDPRKRPSMQEVLEALEQVEESREKPKESKTSNTQSKQLHQKQANNSSAK 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9726797 9729889 + CmaCh16G012780.1 Cma16g01278 311876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01278 402 MobiDBLite consensus disorder prediction 366 402 - -
Cma16g01278 402 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Cma16g01278 402 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 26 387 - -
Cma16g01278 402 Gene3D Transferase(Phosphotransferase) domain 1 172 399 - -
Cma16g01278 402 Gene3D Phosphorylase Kinase; domain 1 70 171 - -
Cma16g01278 402 CDD STKc_IRAK 92 370 - -
Cma16g01278 402 Pfam Protein tyrosine and serine/threonine kinase 90 368 IPR001245 GO:0004672|GO:0006468
Cma16g01278 402 MobiDBLite consensus disorder prediction 384 402 - -
Cma16g01278 402 MobiDBLite consensus disorder prediction 1 36 - -
Cma16g01278 402 MobiDBLite consensus disorder prediction 366 383 - -
Cma16g01278 402 PANTHER OS01G0588500 PROTEIN-RELATED 26 387 - -
Cma16g01278 402 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g01278 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cma16g01278 402 SUPERFAMILY Protein kinase-like (PK-like) 70 376 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01278 - - - csv:101213299 665.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00976 Cma-Chr5:7876417 Cma16g01278 Cma-Chr16:9726797 1.26E-141 dispersed
Cma11g01334 Cma-Chr11:8844329 Cma16g01278 Cma-Chr16:9726797 5.62E-145 dispersed
Cma12g00679 Cma-Chr12:3670396 Cma16g01278 Cma-Chr16:9726797 2.40E-150 dispersed
Cma16g01278 Cma-Chr16:9726797 Cma19g00797 Cma-Chr19:7706257 2.46E-155 dispersed
Cma16g01278 Cma-Chr16:9726797 Cma06g00159 Cma-Chr6:796002 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1189 Blo04g00863 . . . Bpe15g00497 Bpe13g00391 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0892 . Cone6ag1697 Cone9ag1621 . . . . . . . . . . Bma03g00931 Bma06g00077 . . . Cma16g01278 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003844 1 1 1 2 2 0 2 0 0 2 1 0 2 2 0 2 0 0 2 0 2 0 0 0 0 1 0 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69213 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01278 Cma_Chr16 FPKM 12.573201 14.704916 4.49308 5.146364 9.40695 8.901175 8.832027 2.909239 3.078818 2.412255