Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01290 ATGGCAATGTCGTTTAAGCCTTCGGATTTGGACTCTTCAGCTTTTGATGCGCAATCTTCGTCCAATCCGATTCCCTCGGATGCTACTCCGGTTCCCTTGGATCCCCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCACTGCTCATCGTCCTCCCCTTCCTCCACACCACCTCCGGTTCATTTACCTCTTTCTTGGCCTCCCGATGACACTCTTTCCCTTCAATGGATTCAGCATCTCATCGCCGCTTTCGATTGGTCTTCCAAAAATTTATCTCCATCCGAGTTTCCTTCTGTTCTTCCCGTCTCTGTTTTCGACACTCTAATCCTCACAGCCTCCAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCGACGACTCAGTCGCCAGCAGCGACTCGACTGTAGTCGTTGTCGGAGACATCCACGGGCAATTTCATGATCTCATCTTTCTTCTGCAGGATGCTGGGTTTCCTTCTGATAATCGTTTCTTTGTCTTCAATGGTGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTATTCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTTCTAACCAAGTACGGAGACAAAGGTAAGCATGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATAGCTGGACGTGTATTTACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCATCTAAAAGATCAAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCTGAAGCCAACGGGTTATCTCTTGGTTCATTAGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATACCTGGTGATGTGTTGTGGTCTGATCCCTCGATGAATCCCGGGCTCTCCCCAAATAGAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCGATCTGAAGCTAATTATCAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGGAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCTGGGAAATTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCTACTGGGAAGAGGTACAAAAATAAAGGTGCATATATTGTTCTAGAACCTCCAAATTTTGATGTTCCAATCATTCATAGTTTTGAAGCCATTACTCCACGACCGAAGGTCAATGCGTACTATGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGATTTGGCAACAATGACAACTGATCCATGA 1407 44.99 MAMSFKPSDLDSSAFDAQSSSNPIPSDATPVPLDPPSTSSTLSESEENHCSSSSPSSTPPPVHLPLSWPPDDTLSLQWIQHLIAAFDWSSKNLSPSEFPSVLPVSVFDTLILTASKILHKEPNCLRILDDSVASSDSTVVVVGDIHGQFHDLIFLLQDAGFPSDNRFFVFNGDYVDRGAWGLETFILLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVFTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNRERGIGLLWGPDCTEEFLKKFDLKLIIRSHEGPDAREKRPGLGGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATGKRYKNKGAYIVLEPPNFDVPIIHSFEAITPRPKVNAYYDFEDVIDSDEELDLATMTTDP 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9767684 9774305 + CmaCh16G012900.1 Cma16g01290 311888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01290 468 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 45 464 - -
Cma16g01290 468 Pfam Calcineurin-like phosphoesterase 138 366 IPR004843 GO:0016787
Cma16g01290 468 SMART pp2a_7 102 438 IPR006186 GO:0016787
Cma16g01290 468 PRINTS Serine/threonine phosphatase family signature 138 165 IPR006186 GO:0016787
Cma16g01290 468 PRINTS Serine/threonine phosphatase family signature 168 195 IPR006186 GO:0016787
Cma16g01290 468 PRINTS Serine/threonine phosphatase family signature 201 225 IPR006186 GO:0016787
Cma16g01290 468 PRINTS Serine/threonine phosphatase family signature 238 264 IPR006186 GO:0016787
Cma16g01290 468 PRINTS Serine/threonine phosphatase family signature 298 325 IPR006186 GO:0016787
Cma16g01290 468 PRINTS Serine/threonine phosphatase family signature 392 408 IPR006186 GO:0016787
Cma16g01290 468 ProSitePatterns Serine/threonine specific protein phosphatases signature. 202 207 IPR006186 GO:0016787
Cma16g01290 468 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 45 464 - -
Cma16g01290 468 MobiDBLite consensus disorder prediction 11 57 - -
Cma16g01290 468 SUPERFAMILY Metallo-dependent phosphatases 97 439 IPR029052 -
Cma16g01290 468 CDD MPP_PP7 68 448 IPR041754 -
Cma16g01290 468 MobiDBLite consensus disorder prediction 1 66 - -
Cma16g01290 468 Gene3D - 93 457 IPR029052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02634 Cma-Chr4:17967687 Cma16g01290 Cma-Chr16:9767684 3.82E-134 dispersed
Cma16g01290 Cma-Chr16:9767684 Cma11g01949 Cma-Chr11:12806464 2.72E-55 dispersed
Cma06g00172 Cma-Chr6:851978 Cma16g01290 Cma-Chr16:9767684 4.86E-55 transposed
Cma16g01290 Cma-Chr16:9767684 Cma06g00171 Cma-Chr6:850961 1.98E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01290 K04460 - csv:116402529 794.267