Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g01291 | ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAGGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGCGGAAGATGAGCTCCATGATTCTCTCTGTGTGACAGTTGAGGCAACTCCCAACTCATGTGAAAAAGAGATTGACTCACCTGAGACTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGAGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATAGCAAATCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTATTAAAGCGGAAACAGAAAATGCCGTAGGGTTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAAAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGAAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAATCTGATCCGGCCGGACGCTTGGTAATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTTAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCGCATCAGACTTCTGCAGTTGTCACCTTACACGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA | 1395 | 44.23 | MCDAKEKQESAQDVSVALSEGNQVNAEDELHDSLCVTVEATPNSCEKEIDSPETLVKTGPDELPPRELSLDAATSNSHIETVQSSMDAKSEAFEMPETKTGSLDHALIANHDEPVTPHPVSSCIKAETENAVGLKVNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 9774416 | 9780027 | - | CmaCh16G012910.1 | Cma16g01291 | 311889 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g01291 | 464 | CDD | ARID | 176 | 258 | - | - | |
Cma16g01291 | 464 | ProSiteProfiles | ARID domain profile. | 171 | 262 | IPR001606 | GO:0003677 | |
Cma16g01291 | 464 | SMART | ARID_2 | 168 | 258 | - | - | |
Cma16g01291 | 464 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 53 | 462 | IPR045147 | GO:0006357 | |
Cma16g01291 | 464 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 364 | 464 | IPR002068 | - | |
Cma16g01291 | 464 | Gene3D | - | 171 | 268 | IPR036431 | GO:0003677 | |
Cma16g01291 | 464 | MobiDBLite | consensus disorder prediction | 269 | 292 | - | - | |
Cma16g01291 | 464 | SMART | bright_3 | 172 | 263 | IPR001606 | GO:0003677 | |
Cma16g01291 | 464 | CDD | ACD_sHsps-like | 379 | 459 | - | - | |
Cma16g01291 | 464 | SUPERFAMILY | ARID-like | 166 | 272 | IPR036431 | GO:0003677 | |
Cma16g01291 | 464 | Gene3D | - | 353 | 464 | IPR008978 | - | |
Cma16g01291 | 464 | SUPERFAMILY | HSP20-like chaperones | 375 | 460 | IPR008978 | - | |
Cma16g01291 | 464 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE | 53 | 462 | - | - | |
Cma16g01291 | 464 | Pfam | Hsp20/alpha crystallin family | 381 | 461 | IPR002068 | - | |
Cma16g01291 | 464 | Pfam | ARID/BRIGHT DNA binding domain | 174 | 258 | IPR001606 | GO:0003677 | |
Cma16g01291 | 464 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02043 | Cma-Chr1:12993973 | Cma16g01291 | Cma-Chr16:9774416 | 1.02E-138 | transposed | |
Cma16g01291 | Cma-Chr16:9774416 | Cma06g00173 | Cma-Chr6:852031 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36616 | PF00011 | HSP20 | 7.20E-06 | CL0190 | Cma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g01291 | - | - | cmax:111465194 | 916.376 |