Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01291 ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAGGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGCGGAAGATGAGCTCCATGATTCTCTCTGTGTGACAGTTGAGGCAACTCCCAACTCATGTGAAAAAGAGATTGACTCACCTGAGACTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGAGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATAGCAAATCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTATTAAAGCGGAAACAGAAAATGCCGTAGGGTTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAAAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGAAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAATCTGATCCGGCCGGACGCTTGGTAATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTTAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCGCATCAGACTTCTGCAGTTGTCACCTTACACGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1395 44.23 MCDAKEKQESAQDVSVALSEGNQVNAEDELHDSLCVTVEATPNSCEKEIDSPETLVKTGPDELPPRELSLDAATSNSHIETVQSSMDAKSEAFEMPETKTGSLDHALIANHDEPVTPHPVSSCIKAETENAVGLKVNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9774416 9780027 - CmaCh16G012910.1 Cma16g01291 311889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01291 464 CDD ARID 176 258 - -
Cma16g01291 464 ProSiteProfiles ARID domain profile. 171 262 IPR001606 GO:0003677
Cma16g01291 464 SMART ARID_2 168 258 - -
Cma16g01291 464 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 53 462 IPR045147 GO:0006357
Cma16g01291 464 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 364 464 IPR002068 -
Cma16g01291 464 Gene3D - 171 268 IPR036431 GO:0003677
Cma16g01291 464 MobiDBLite consensus disorder prediction 269 292 - -
Cma16g01291 464 SMART bright_3 172 263 IPR001606 GO:0003677
Cma16g01291 464 CDD ACD_sHsps-like 379 459 - -
Cma16g01291 464 SUPERFAMILY ARID-like 166 272 IPR036431 GO:0003677
Cma16g01291 464 Gene3D - 353 464 IPR008978 -
Cma16g01291 464 SUPERFAMILY HSP20-like chaperones 375 460 IPR008978 -
Cma16g01291 464 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 53 462 - -
Cma16g01291 464 Pfam Hsp20/alpha crystallin family 381 461 IPR002068 -
Cma16g01291 464 Pfam ARID/BRIGHT DNA binding domain 174 258 IPR001606 GO:0003677
Cma16g01291 464 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02043 Cma-Chr1:12993973 Cma16g01291 Cma-Chr16:9774416 1.02E-138 transposed
Cma16g01291 Cma-Chr16:9774416 Cma06g00173 Cma-Chr6:852031 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36616 PF00011 HSP20 7.20E-06 CL0190 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01291 - - cmax:111465194 916.376