Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g01291 ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAGGATGTTTCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGCGGAAGATGAGCTCCATGATTCTCTCTGTGTGACAGTTGAGGCAACTCCCAACTCATGTGAAAAAGAGATTGACTCACCTGAGACTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGAGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATAGCAAATCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTATTAAAGCGGAAACAGAAAATGCCGTAGGGTTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTTTCATGGACATTTCGAGGATTTTATGAAAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGAAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCTGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAATCTGATCCGGCCGGACGCTTGGTAATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTTAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCGCATCAGACTTCTGCAGTTGTCACCTTACACGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1395 44.23 MCDAKEKQESAQDVSVALSEGNQVNAEDELHDSLCVTVEATPNSCEKEIDSPETLVKTGPDELPPRELSLDAATSNSHIETVQSSMDAKSEAFEMPETKTGSLDHALIANHDEPVTPHPVSSCIKAETENAVGLKVNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9774416 9780027 - CmaCh16G012910.1 Cma16g01291 311889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g01291 464 CDD ARID 176 258 - -
Cma16g01291 464 ProSiteProfiles ARID domain profile. 171 262 IPR001606 GO:0003677
Cma16g01291 464 SMART ARID_2 168 258 - -
Cma16g01291 464 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 53 462 IPR045147 GO:0006357
Cma16g01291 464 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 364 464 IPR002068 -
Cma16g01291 464 Gene3D - 171 268 IPR036431 GO:0003677
Cma16g01291 464 MobiDBLite consensus disorder prediction 269 292 - -
Cma16g01291 464 SMART bright_3 172 263 IPR001606 GO:0003677
Cma16g01291 464 CDD ACD_sHsps-like 379 459 - -
Cma16g01291 464 SUPERFAMILY ARID-like 166 272 IPR036431 GO:0003677
Cma16g01291 464 Gene3D - 353 464 IPR008978 -
Cma16g01291 464 SUPERFAMILY HSP20-like chaperones 375 460 IPR008978 -
Cma16g01291 464 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 53 462 - -
Cma16g01291 464 Pfam Hsp20/alpha crystallin family 381 461 IPR002068 -
Cma16g01291 464 Pfam ARID/BRIGHT DNA binding domain 174 258 IPR001606 GO:0003677
Cma16g01291 464 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g01291 - - - cmax:111465194 916.376
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02043 Cma-Chr1:12993973 Cma16g01291 Cma-Chr16:9774416 1.02E-138 transposed
Cma16g01291 Cma-Chr16:9774416 Cma06g00173 Cma-Chr6:852031 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36616 PF00011 HSP20 7.20E-06 CL0190 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g01291 Cma_Chr16 FPKM 5.93266 6.929711 12.617214 12.966686 13.867887 14.16569 13.812135 11.079229 10.262253 10.28112