Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00003 | ATGGACAATTACGGTTCTTCCCCTTCATATCCATACCACCATCCATATGCATACCCTCGTCCAGTTCCTCCTCAATACCCACCGCCTCCTCAATATCCACCTCCTCCTCAACATCCACCTCCTCCTCATTATACGCATCCAAATTCAGATCCATATGCTCGTCCTCCGTACCCTTACCCGTATGATCCTTCACATGCCTCTGTATTTGCATATCCCCCACCCCCATCTCATTCTGGCCAAGTAGAGTATTTTCAACATCCACCTCCACACTCTGGGCCTATACCTTCCCCATATTCTTACGGTGATGCCTCTTATACTAATGATAGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTACATCCCCATATCGGTATGAAGAATCTAGTACATACCCTCCCCCAGAAACTCAATACCCACCACCCCCTTCGCGAGTAAATAACTCCTCTGGCCACTATGATAGCACTGATTCGGTATCGCCTGGCTCTTCTGCATACCCGCCTTTGGATGACCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCGCCTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTACAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAATCTAGTACATACCCTCCCTCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATGATAGCCCTGATTCTGTTTCGCCTGTCTCCTCTGCATACCCGCCTTTGGATAGCCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTACAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAACCTGGTACATACCCTCCCCCAGAAAGTCAATACCCACCACCCCTTTCACGAGCAAATAGCTTCTCTGGCCACTATAATGGCACTGATTCCTCATCGCCTGTCTCTTATGCGTACCCGCCTCTGGATGACCTTTTGGGTAATGTACATTTGTCTGATCATCAACCAACTTCTCCTGCATCACCTTCTGCCCCTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTATAAGATATGATCGGCGCGACCGATTTTATGGCTTTCCTAATTCATCATTTTCTAGTTTCGATACGGGGAATTCATATCAAATGGCTTCATCCAATCAACCTTCATTTTCCCATTCAAGCTCATTCGGTGGGTCTCAACATAGTCAGGACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAGGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAACATGGACATGTTTCACAAGACCTTGGGGGATATGTTTGCAAAATTACCTGGGAATATGAGCAACAAAGTTGAAGGACATGTGAGTCATAAGATCACTAGTGATCCTTACGTTTCGATCTATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGAATGGAGGCAGCATTTCAATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCGCAGCTAATAGGAACTGTAACAATTCCTGCAGAACAAATATATGCAGGGTCTGTAGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAACTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTACCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTGTACCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTATATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGGTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGATTTTTCAAACAATCCTCTGTACAAGTGATACTTTGTCCTCGGATGGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGGAAGTTGGAACTATCTATACACACCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATAATCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTATCACAATCCTACATACACGGGTAGTACTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGTCCAGCAGCATATGATGTTTTGACCAATTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAAAAGTTGAAATCATATGATGATGCTTTGCTGCGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTACTGTAACTATGAAAATGATCCTGAATCATGGCATGTGCAGATTTTTCGTTCAATTGATTCAAGTTCTGTTAAAGATTTCCCGAAGGACCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACACTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGGAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGCGTCCCAACTGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGAGGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGATGTGGATGGAAATGATCCTTTATCTTCTGGAAGCCCTAGTGCAGAAAACTCCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTGATTTTGGGATCTGCTAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACATGGGCAAAGAAGCGTTCACGTCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACAGGAACGATGGAAGAGCGTTTCAATGAACCGGAGAGCCTGGAATGCGTGAGAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGAGGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAAATCCCTTCCTGGACATGAAAATTTTCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGGATTCAGGAGAACCTCACTATCTAA | 3822 | 43.67 | MDNYGSSPSYPYHHPYAYPRPVPPQYPPPPQYPPPPQHPPPPHYTHPNSDPYARPPYPYPYDPSHASVFAYPPPPSHSGQVEYFQHPPPHSGPIPSPYSYGDASYTNDSARPSIQYHNNFQPGTSPYRYEESSTYPPPETQYPPPPSRVNNSSGHYDSTDSVSPGSSAYPPLDDPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQITRYDRFTSNYKNEESSTYPPSESQYPPPPSRVNSFSGHYDSPDSVSPVSSAYPPLDSPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQITRYDRFTSNYKNEEPGTYPPPESQYPPPLSRANSFSGHYNGTDSSSPVSYAYPPLDDLLGNVHLSDHQPTSPASPSAPAQPSVSLLSHSPQIIRYDRRDRFYGFPNSSFSSFDTGNSYQMASSNQPSFSHSSSFGGSQHSQDLQIVPLHSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKVEGHVSHKITSDPYVSIYVANAVIGRTFVISNNENPEWRQHFNVPVAHYAAEVVFVVKDSDVVGSQLIGTVTIPAEQIYAGSVVEGTFPILLGGKPCKPGAALTISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKQSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPSHPIFRTLQTVHKDDYHNPTYTGSTVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIHDIIGISEAYCNYENDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRGNERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREDVDGNDPLSSGSPSAENSPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWAKKRSRPRGQIYGYRMSLWAEHTGTMEERFNEPESLECVRRVRTMGELNWKQFAADEVTEMRGHLLKYPVEVDRRGRVKSLPGHENFPDVGGKIVGSFLGIQENLTI | 1273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 12987 | 23751 | + | CmaCh17G000030.1 | Cma17g00003 | 311898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 329 | 350 | - | - | |
Cma17g00003 | 1273 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 460 | 610 | IPR035892 | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 289 | 315 | - | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 237 | 260 | - | - | |
Cma17g00003 | 1273 | PANTHER | PHOSPHOLIPASE D ALPHA 1 | 363 | 1273 | - | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 100 | 136 | - | - | |
Cma17g00003 | 1273 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 786 | 821 | IPR001736 | GO:0003824 | |
Cma17g00003 | 1273 | PANTHER | PHOSPHOLIPASE D | 363 | 1273 | IPR015679 | - | |
Cma17g00003 | 1273 | Gene3D | Endonuclease Chain A | 935 | 1168 | - | - | |
Cma17g00003 | 1273 | SUPERFAMILY | Phospholipase D/nuclease | 627 | 885 | - | - | |
Cma17g00003 | 1273 | SMART | C2_3c | 463 | 585 | IPR000008 | - | |
Cma17g00003 | 1273 | CDD | C2_plant_PLD | 456 | 608 | - | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 14 | 70 | - | - | |
Cma17g00003 | 1273 | Pfam | C2 domain | 462 | 588 | IPR000008 | - | |
Cma17g00003 | 1273 | Gene3D | C2 domain | 457 | 598 | IPR035892 | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 1 | 386 | - | - | |
Cma17g00003 | 1273 | Gene3D | Endonuclease Chain A | 664 | 900 | - | - | |
Cma17g00003 | 1273 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 1119 | 1146 | IPR001736 | GO:0003824 | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 365 | 386 | - | - | |
Cma17g00003 | 1273 | ProSiteProfiles | C2 domain profile. | 440 | 586 | IPR000008 | - | |
Cma17g00003 | 1273 | SMART | pld_4 | 786 | 821 | IPR001736 | GO:0003824 | |
Cma17g00003 | 1273 | SMART | pld_4 | 1119 | 1146 | IPR001736 | GO:0003824 | |
Cma17g00003 | 1273 | Pfam | Phospholipase D Active site motif | 787 | 821 | IPR001736 | GO:0003824 | |
Cma17g00003 | 1273 | Pfam | Phospholipase D Active site motif | 1120 | 1146 | IPR001736 | GO:0003824 | |
Cma17g00003 | 1273 | Pfam | Phospholipase D C terminal | 1193 | 1263 | IPR024632 | - | |
Cma17g00003 | 1273 | MobiDBLite | consensus disorder prediction | 197 | 229 | - | - | |
Cma17g00003 | 1273 | SUPERFAMILY | Phospholipase D/nuclease | 899 | 1204 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00400 | Cma-Chr7:1719675 | Cma17g00003 | Cma-Chr17:12987 | 0 | dispersed | |
Cma08g00678 | Cma-Chr8:4167206 | Cma17g00003 | Cma-Chr17:12987 | 0 | dispersed | |
Cma06g00726 | Cma-Chr6:3679605 | Cma17g00003 | Cma-Chr17:12987 | 0 | transposed | |
Cma17g00003 | Cma-Chr17:12987 | Cma08g00939 | Cma-Chr8:5850444 | 1.08E-15 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00003 | K01115 | - | csv:101218942 | 1793.86 |