Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00003 ATGGACAATTACGGTTCTTCCCCTTCATATCCATACCACCATCCATATGCATACCCTCGTCCAGTTCCTCCTCAATACCCACCGCCTCCTCAATATCCACCTCCTCCTCAACATCCACCTCCTCCTCATTATACGCATCCAAATTCAGATCCATATGCTCGTCCTCCGTACCCTTACCCGTATGATCCTTCACATGCCTCTGTATTTGCATATCCCCCACCCCCATCTCATTCTGGCCAAGTAGAGTATTTTCAACATCCACCTCCACACTCTGGGCCTATACCTTCCCCATATTCTTACGGTGATGCCTCTTATACTAATGATAGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTACATCCCCATATCGGTATGAAGAATCTAGTACATACCCTCCCCCAGAAACTCAATACCCACCACCCCCTTCGCGAGTAAATAACTCCTCTGGCCACTATGATAGCACTGATTCGGTATCGCCTGGCTCTTCTGCATACCCGCCTTTGGATGACCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCGCCTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTACAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAATCTAGTACATACCCTCCCTCAGAAAGTCAATACCCACCACCCCCTTCACGAGTAAATAGCTTCTCTGGCCACTATGATAGCCCTGATTCTGTTTCGCCTGTCTCCTCTGCATACCCGCCTTTGGATAGCCCTTTGTGTAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCATCACCTCCTGCACCTGCGCAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTACAAGATATGATCGATTCACCTCAAATTACAAGAATGAAGAACCTGGTACATACCCTCCCCCAGAAAGTCAATACCCACCACCCCTTTCACGAGCAAATAGCTTCTCTGGCCACTATAATGGCACTGATTCCTCATCGCCTGTCTCTTATGCGTACCCGCCTCTGGATGACCTTTTGGGTAATGTACATTTGTCTGATCATCAACCAACTTCTCCTGCATCACCTTCTGCCCCTGCACAGCCTTCAGTTTCATTATTGTCGCATTCACCTCAAATTATAAGATATGATCGGCGCGACCGATTTTATGGCTTTCCTAATTCATCATTTTCTAGTTTCGATACGGGGAATTCATATCAAATGGCTTCATCCAATCAACCTTCATTTTCCCATTCAAGCTCATTCGGTGGGTCTCAACATAGTCAGGACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAGGTTTTGCTGTTGCATGGAAACTTAGAAATATGGGTTAATGAGGCCAAAAATCTTCCAAACATGGACATGTTTCACAAGACCTTGGGGGATATGTTTGCAAAATTACCTGGGAATATGAGCAACAAAGTTGAAGGACATGTGAGTCATAAGATCACTAGTGATCCTTACGTTTCGATCTATGTAGCAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGAATGGAGGCAGCATTTCAATGTTCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCGCAGCTAATAGGAACTGTAACAATTCCTGCAGAACAAATATATGCAGGGTCTGTAGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAACTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCATCATGGAGTGGGAGCTGGCCCTGATTACCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTGTACCAAGATGCCCATGTTCCAGATGGACACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCTGTACGTCAGGCTCGCAGGTTAATTTATATAACTGGGTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTGAGGTCAAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGGTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGATTTTTCAAACAATCCTCTGTACAAGTGATACTTTGTCCTCGGATGGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGGAAGTTGGAACTATCTATACACACCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATAATCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTATCACAATCCTACATACACGGGTAGTACTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGTCCAGCAGCATATGATGTTTTGACCAATTTTGAGGAGCGATGGAGGAGAGCTTCAAAACCTCACGGGATAAAAAAGTTGAAATCATATGATGATGCTTTGCTGCGTATTGAAAGAATTCATGACATAATTGGAATTTCTGAAGCGTACTGTAACTATGAAAATGATCCTGAATCATGGCATGTGCAGATTTTTCGTTCAATTGATTCAAGTTCTGTTAAAGATTTCCCGAAGGACCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATACGTGAAAGCCATTCGAGCTGCCCAACACTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGGAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGCGTCCCAACTGCTGCTGCCACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCCTTGATGGAGGTTGGTCTTGAGGAGGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGATGTGGATGGAAATGATCCTTTATCTTCTGGAAGCCCTAGTGCAGAAAACTCCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTGATTTTGGGATCTGCTAACATCAACCAGAGATCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACATGGGCAAAGAAGCGTTCACGTCCTCGTGGACAGATCTATGGATATAGGATGTCATTGTGGGCGGAGCATACAGGAACGATGGAAGAGCGTTTCAATGAACCGGAGAGCCTGGAATGCGTGAGAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGAGGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAAATCCCTTCCTGGACATGAAAATTTTCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGGATTCAGGAGAACCTCACTATCTAA 3822 43.67 MDNYGSSPSYPYHHPYAYPRPVPPQYPPPPQYPPPPQHPPPPHYTHPNSDPYARPPYPYPYDPSHASVFAYPPPPSHSGQVEYFQHPPPHSGPIPSPYSYGDASYTNDSARPSIQYHNNFQPGTSPYRYEESSTYPPPETQYPPPPSRVNNSSGHYDSTDSVSPGSSAYPPLDDPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQITRYDRFTSNYKNEESSTYPPSESQYPPPPSRVNSFSGHYDSPDSVSPVSSAYPPLDSPLCNVHLSDHQPTAPASPPAPAQPSVSLLSHSPQITRYDRFTSNYKNEEPGTYPPPESQYPPPLSRANSFSGHYNGTDSSSPVSYAYPPLDDLLGNVHLSDHQPTSPASPSAPAQPSVSLLSHSPQIIRYDRRDRFYGFPNSSFSSFDTGNSYQMASSNQPSFSHSSSFGGSQHSQDLQIVPLHSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKVEGHVSHKITSDPYVSIYVANAVIGRTFVISNNENPEWRQHFNVPVAHYAAEVVFVVKDSDVVGSQLIGTVTIPAEQIYAGSVVEGTFPILLGGKPCKPGAALTISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKQSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDNPSHPIFRTLQTVHKDDYHNPTYTGSTVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIHDIIGISEAYCNYENDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRGNERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREDVDGNDPLSSGSPSAENSPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWAKKRSRPRGQIYGYRMSLWAEHTGTMEERFNEPESLECVRRVRTMGELNWKQFAADEVTEMRGHLLKYPVEVDRRGRVKSLPGHENFPDVGGKIVGSFLGIQENLTI 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 12987 23751 + CmaCh17G000030.1 Cma17g00003 311898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00003 1273 MobiDBLite consensus disorder prediction 329 350 - -
Cma17g00003 1273 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 460 610 IPR035892 -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 289 315 - -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 146 166 - -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 237 260 - -
Cma17g00003 1273 PANTHER PHOSPHOLIPASE D ALPHA 1 363 1273 - -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 100 136 - -
Cma17g00003 1273 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 786 821 IPR001736 GO:0003824
Cma17g00003 1273 PANTHER PHOSPHOLIPASE D 363 1273 IPR015679 -
Cma17g00003 1273 Gene3D Endonuclease Chain A 935 1168 - -
Cma17g00003 1273 SUPERFAMILY Phospholipase D/nuclease 627 885 - -
Cma17g00003 1273 SMART C2_3c 463 585 IPR000008 -
Cma17g00003 1273 CDD C2_plant_PLD 456 608 - -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 14 70 - -
Cma17g00003 1273 Pfam C2 domain 462 588 IPR000008 -
Cma17g00003 1273 Gene3D C2 domain 457 598 IPR035892 -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 1 386 - -
Cma17g00003 1273 Gene3D Endonuclease Chain A 664 900 - -
Cma17g00003 1273 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1119 1146 IPR001736 GO:0003824
Cma17g00003 1273 MobiDBLite consensus disorder prediction 365 386 - -
Cma17g00003 1273 ProSiteProfiles C2 domain profile. 440 586 IPR000008 -
Cma17g00003 1273 SMART pld_4 786 821 IPR001736 GO:0003824
Cma17g00003 1273 SMART pld_4 1119 1146 IPR001736 GO:0003824
Cma17g00003 1273 Pfam Phospholipase D Active site motif 787 821 IPR001736 GO:0003824
Cma17g00003 1273 Pfam Phospholipase D Active site motif 1120 1146 IPR001736 GO:0003824
Cma17g00003 1273 Pfam Phospholipase D C terminal 1193 1263 IPR024632 -
Cma17g00003 1273 MobiDBLite consensus disorder prediction 197 229 - -
Cma17g00003 1273 SUPERFAMILY Phospholipase D/nuclease 899 1204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00400 Cma-Chr7:1719675 Cma17g00003 Cma-Chr17:12987 0 dispersed
Cma08g00678 Cma-Chr8:4167206 Cma17g00003 Cma-Chr17:12987 0 dispersed
Cma06g00726 Cma-Chr6:3679605 Cma17g00003 Cma-Chr17:12987 0 transposed
Cma17g00003 Cma-Chr17:12987 Cma08g00939 Cma-Chr8:5850444 1.08E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00003 K01115 - csv:101218942 1793.86