Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00018 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGAGGTGCTGGTGCTCGATTCGTAGCGGATTTACCTTACACAATTAACTCCACCACCAACAATAACCCCACCGGCGGCATCGGCGGTGGCGGAAATATATCCTCCGGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCCCTCACCAAATCGATGTTCAACTCCCCTGGACTGTCTCTTGCTCTTACGAACATGGACGGCGGGCAGGGAGATTTAGCTGCCCGATTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGCGATGACCAGGACGCTGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGCCTCGAGTTGAGTAGGAGGCTGTGCTTAGAAACTAGACAAGTTAAATTTTGGTTCCAAAACCGGAGGACCCAAATGAAGACCCAGTTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCAATCTGTTCGAATTGCGGCGGTCCGGCGATTATCGGAGAAATCTCGCTGGAAGAGCAGCAGTTAAGGATTGATAATGCTCGGCTGAAGGATGAGTTGGACCGGGTTTGTGCACTTGCTGGGAAGTTTCTCGGCAGACCAATTTTGTCACTGGCCAACTCCATTGCACCTCCATTGCCGAGCTCAAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGTAATTTGACCATGGCGACTTCAATGCCTATTGGACCGGATTTTGGAGGTGGGTTGTCGGGTAATCTGGCTGTCGTTCAGCCACCTGTGAGGCCAACACCGGGGACAGGACTTGATCGTTCAGTTGAACGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGATGAGCCACTTTGGATTGGTAACTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAATACATGAGGACATTCACTCCTTGCATTGGAATGAAATCGAATGGTTTCGTCACGGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAACAGCTTGGCTCTTGTTGAGACATTGATGGACTCGAATCGATGGGCTGAGATGTTTCCATGTATGATTGCTCGAACGACGACCATCGATGTGATCTCCAGTGGCATGGGGGGAAGCAGGAATGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCACCTTTGGTGCCAGTCCGGGAAGTCAGTTTTCTTCGGTTCTGCAAGCAGCATGCCGAAGGGGTATGGGCAGTCGTCGACGTATCGGTCGATGCCATGAGAGAGACGCCAACTGGTGGGGGTTCGCCATTCATCAACTGCCGAAGGCTTCCTTCTGGGTGTGTCGTTCAAGACATGCCCAATGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTCCACCAGCTCTACCGTCCCCTACTCAGCTCCGGCATGGGCTTCGGAGCACAACGGTGGGTTGCCACCCTTCAACGGCAATGTGAATGCCTCGCCATTCTCATGTCATCAGCTGCACCAATACGAGACCACACCGCCATAACTGCTGGCGGGAGGCGGAGCATGCTGAAGCTAGCGCAACGAATGACAGCCAACTTCTGCGCAGGCGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTCGATGAGGACGTCCGAGTCATGACACGAAAGAGCGTGGACGATCCTGGGGAACCTCCAGGCATTGTGTTGAGTGCAGCTACGTCGGTATGGCTCCCGGTATCGCCCCAACGACTTTTTGATTTCCTCCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCTCATATCGCCAAAGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGACGCGGCCGGCTCCCTTGTGGTCTACGCGCCGGTGGACATCCCGGCAATGCACGTAGTGATGAATGGCGGCGATTCGGCGTACGTGGCGCTTTTGCCTTCGGGGTTTGCGATTGTGGCTGACGGCGCGGTGACAGGTGGGAGGAGTCCGAGTGGCGGGGAGGGAGGGCGGCAGGGTGAGAGAGGGACAGGCGGTGGGTCCCTGCTCACCGTGGCATTTCAAATCCTGGTGAATAGCCTCCCTACAGCGAAGCTCACCGTGGAATCGGTTGAAACAGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGCGAAACCTGA 2499 53.74 MSFGGFLDGGGGGGAGARFVADLPYTINSTTNNNPTGGIGGGGNISSGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCALAGKFLGRPILSLANSIAPPLPSSSLELGVGSNGFGNLTMATSMPIGPDFGGGLSGNLAVVQPPVRPTPGTGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGNLEGGREILNQEEYMRTFTPCIGMKSNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTIDVISSGMGGSRNGALQLMHAELQVLSPLVPVREVSFLRFCKQHAEGVWAVVDVSVDAMRETPTGGGSPFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSAAPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVADGAVTGGRSPSGGEGGRQGERGTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 72796 77813 + CmaCh17G000180.1 Cma17g00018 311913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00018 832 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Cma17g00018 832 SUPERFAMILY Homeodomain-like 113 188 IPR009057 -
Cma17g00018 832 SMART START_1 339 565 IPR002913 GO:0008289
Cma17g00018 832 SMART HOX_1 129 192 IPR001356 GO:0003677
Cma17g00018 832 CDD START_ArGLABRA2_like 334 564 - -
Cma17g00018 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 76 830 - -
Cma17g00018 832 MobiDBLite consensus disorder prediction 92 111 - -
Cma17g00018 832 Coils Coil 182 214 - -
Cma17g00018 832 Gene3D - 388 562 IPR023393 -
Cma17g00018 832 CDD homeodomain 130 188 IPR001356 GO:0003677
Cma17g00018 832 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 830 IPR042160 -
Cma17g00018 832 ProSiteProfiles START domain profile. 330 568 IPR002913 GO:0008289
Cma17g00018 832 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Cma17g00018 832 SUPERFAMILY Bet v1-like 332 565 - -
Cma17g00018 832 Pfam START domain 339 565 IPR002913 GO:0008289
Cma17g00018 832 Gene3D - 118 204 - -
Cma17g00018 832 MobiDBLite consensus disorder prediction 91 138 - -
Cma17g00018 832 SUPERFAMILY Bet v1-like 593 825 - -
Cma17g00018 832 Pfam Homeodomain 131 186 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g02014 Cma17g00018 CCT
Cma14g02014 Cma17g00018 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01832 Cma-Chr11:12238851 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma13g00725 Cma-Chr13:6447191 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma14g00866 Cma-Chr14:4462605 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma14g02014 Cma-Chr14:14093630 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma16g00140 Cma-Chr16:612841 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma17g00018 Cma-Chr17:72796 Cma18g01234 Cma-Chr18:9694311 0 dispersed
Cma17g00018 Cma-Chr17:72796 Cma08g00920 Cma-Chr8:5742070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36619 PF01852 START 4.00E-58 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00018 K09338 - csv:101222248 1475.3