Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00027 ATGGAGTTTGATATGGATAGAATTACACCCCACACTCGCCCTCTTCCCCCTCCTTTCCTCTCCAAGGGTCTTCATCTCCACCACCGCCAAAACTCCCATGACGACCAAAGCGGCGGAGCTAAAAGGGATAGGGAGGAGGAAAATCCCATCACCGCGGCGGAGACTAAGGAATTATCCAATTCTTCTTCTCGACGCCCACGTGGCCGACCAGCTGGTTCCAAAAACAAGCCAAAGCCACCCATTATAATCACTAGAGACAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCCGACATCGTGCATACCCTCGCCGCCTTCGCGCGTAGGCGTCAGCGCGGCGTTTGTATTTTAAGCGCCACTGGAACCGTCGCCAACCTCACTCTCCGACAGCCAGCCTCACCCGCCGCTGTCATCTCCTTACATGGCAGATTTGAAATTCTCTCCCTATCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCTGCCGCCTCCGGGCTGACCGTCTACTTAGCCGGTGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGTCGTCGGCGGGAATGTAATCGGCCCACTTCTGGCGTCCGGTCCGGTGATTATTATGGCAGCTTCATTTGGAAATGCTGCATATGAACGGCTACCCATTGACGAGGAAGACGAAACTTCACCGGCGGCGGAGATGGCGGGAGAACAGGCAGCACCGCCGCCGCCGCAATTGTTGGGGGATCTGAATGGGGGATTGTTTGATGGTGTGAATTCTTCATGCCAATTAGCGGCGGCGGAGGCGGCGTATTGGGGAGGAGGTCGGCCACCGTTTTGA 831 58.24 MEFDMDRITPHTRPLPPPFLSKGLHLHHRQNSHDDQSGGAKRDREEENPITAAETKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVHTLAAFARRRQRGVCILSATGTVANLTLRQPASPAAVISLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQGQGQGQVVGGNVIGPLLASGPVIIMAASFGNAAYERLPIDEEDETSPAAEMAGEQAAPPPPQLLGDLNGGLFDGVNSSCQLAAAEAAYWGGGRPPF 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 116958 117788 - CmaCh17G000270.1 Cma17g00027 311922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00027 276 MobiDBLite consensus disorder prediction 223 249 - -
Cma17g00027 276 Gene3D - 91 226 - -
Cma17g00027 276 CDD DUF296 92 209 IPR005175 -
Cma17g00027 276 MobiDBLite consensus disorder prediction 27 52 - -
Cma17g00027 276 ProSiteProfiles PPC domain profile profile. 88 231 IPR005175 -
Cma17g00027 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 276 IPR014476 GO:0003680
Cma17g00027 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 210 IPR005175 -
Cma17g00027 276 MobiDBLite consensus disorder prediction 53 68 - -
Cma17g00027 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 9 276 - -
Cma17g00027 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 223 - -
Cma17g00027 276 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00103 Cma-Chr15:479122 Cma17g00027 Cma-Chr17:116958 4.96E-58 dispersed
Cma15g01175 Cma-Chr15:7443541 Cma17g00027 Cma-Chr17:116958 1.02E-84 dispersed
Cma17g00027 Cma-Chr17:116958 Cma17g00057 Cma-Chr17:253494 3.93E-65 dispersed
Cma17g00027 Cma-Chr17:116958 Cma06g01130 Cma-Chr6:7608057 4.83E-88 wgd
Cma17g00027 Cma-Chr17:116958 Cma08g00950 Cma-Chr8:5922784 1.46E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00027 - - csv:101220133 388.652