Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00028 ATGAGTGCCAACCCTGGTACTAGCGGCGGCGGCGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCAGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGCGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACAGGTGTCCATCTCAGACCTGCCGTCGGCTTCCTCCCTGCCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGTTGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCCCGCGCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCGATGCCTCGTCGCAGCCATCGCTCTCTAAATGA 660 59.39 MSANPGTSGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVASLQAELSYLQAHLATLELPSPPPPPNFAAQPQVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGVAGGSSTTAGEGDLQALARALLHRHGGPPCSDASSQPSLSK 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 119807 121063 - CmaCh17G000280.1 Cma17g00028 311923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00028 219 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Cma17g00028 219 MobiDBLite consensus disorder prediction 174 190 - -
Cma17g00028 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 5 205 - -
Cma17g00028 219 MobiDBLite consensus disorder prediction 174 219 - -
Cma17g00028 219 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Cma17g00028 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00902 Cma-Chr6:5807568 Cma17g00028 Cma-Chr17:119807 6.69E-31 dispersed
Cma17g00028 Cma-Chr17:119807 Cma19g00079 Cma-Chr19:455219 1.89E-56 dispersed
Cma17g00028 Cma-Chr17:119807 Cma17g00029 Cma-Chr17:126154 3.17E-66 tandem
Cma14g01981 Cma-Chr14:13925865 Cma17g00028 Cma-Chr17:119807 4.58E-63 wgd
Cma17g00028 Cma-Chr17:119807 Cma08g00953 Cma-Chr8:5951982 8.29E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36620 PF03195 LOB 1.30E-37 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00028 K21994 - csv:101220603 338.961