Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00028 | ATGAGTGCCAACCCTGGTACTAGCGGCGGCGGCGGCCCATGTGGGGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCTGGTTGCATATTTGCGCCTTACTTCGACTCGGAGCAAGGCGCAGGGCACTTCGCCGCGGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCCAAGCTCCTCCTTCATATCCCGGTTCACAAGCGCCTCGATGCTGTCGTCACCATTTGCTACGAGTCTCAAGCCCGCCTTCGAGACCCTGTCTATGGCTGCGTCGCTCACATCTTCGCTCTCCAACAACAGGTGGCGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCCCATCTAGCAACACTGGAGCTTCCGTCGCCGCCTCCGCCGCCAAATTTTGCGGCGCAACCACAGGTGTCCATCTCAGACCTGCCGTCGGCTTCCTCCCTGCCGGTCACTTACGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCATCGCCAGTTCTCCAGTGGAGTTGCTGGCGGTTCATCCACAACGGCGGGAGAGGGCGATCTTCAAGCCCTGGCCCGCGCACTCCTCCATAGACATGGCGGTCCGCCGTGCTCCGATGCCTCGTCGCAGCCATCGCTCTCTAAATGA | 660 | 59.39 | MSANPGTSGGGGPCGACKFLRRKCIPGCIFAPYFDSEQGAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQQQVASLQAELSYLQAHLATLELPSPPPPPNFAAQPQVSISDLPSASSLPVTYDLSSLFDPMAQPAWAMQQQRLDHRQFSSGVAGGSSTTAGEGDLQALARALLHRHGGPPCSDASSQPSLSK | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 119807 | 121063 | - | CmaCh17G000280.1 | Cma17g00028 | 311923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00028 | 219 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 111 | IPR004883 | - | |
Cma17g00028 | 219 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
Cma17g00028 | 219 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 5 | 205 | - | - | |
Cma17g00028 | 219 | MobiDBLite | consensus disorder prediction | 174 | 219 | - | - | |
Cma17g00028 | 219 | ProSiteProfiles | LOB domain profile. | 12 | 114 | IPR004883 | - | |
Cma17g00028 | 219 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 5 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00902 | Cma-Chr6:5807568 | Cma17g00028 | Cma-Chr17:119807 | 6.69E-31 | dispersed | |
Cma17g00028 | Cma-Chr17:119807 | Cma19g00079 | Cma-Chr19:455219 | 1.89E-56 | dispersed | |
Cma17g00028 | Cma-Chr17:119807 | Cma17g00029 | Cma-Chr17:126154 | 3.17E-66 | tandem | |
Cma14g01981 | Cma-Chr14:13925865 | Cma17g00028 | Cma-Chr17:119807 | 4.58E-63 | wgd | |
Cma17g00028 | Cma-Chr17:119807 | Cma08g00953 | Cma-Chr8:5951982 | 8.29E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36620 | PF03195 | LOB | 1.30E-37 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00028 | K21994 | - | csv:101220603 | 338.961 |