Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00029 AAAAAAAAAAAAAAAAAAAAAAACACAACAAATACCAAAACCCCATTACCATACAATTCCCCGACATCCAACAAATCCCACCTCCAGAACGCCGTGATGAGTAGCGCCGGCGTCCACGGCGGAGGACCCTGCGGAGCGTGCAAGTTCTTGAGGAGAAAGTGTGTGAAAGGGTGCATTTTTGCACCCTATTTCGACTCGGAACAAGGCGCCGCCCACTTCGCGGCGGTGCACAAGGTGTTTGGAGCTAGCAATGCCTCCAAACTCCTCCTCCGCATCCCGGCAAACAAGCGGCTGGACGCCTGTGTTACCCTTTGTTATGAAGCTCTGGCTAGGGTTCGAGATCCTGTCTATGGCTGTGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAACCTGCAGGCAGAGCTAGCATACATTCAGGCCAAACTTTCCACATTGCAGCGGCTACTACCGCCACCGCTACACAGCCCGTCCTCGACTGCTCGCCACAATCCGCTCCCGGAAACCACCCCTGCCTCCGATATGGGTCTGCTGCCTAATGTTCCAATGCTCCTCGACCCGCTCCAAACGCAGCTAGGTTGTAATGAAACGACGAGTAGCTTTCTGAACCCAATTGATCATGAAGATGAGATGGATGAAGATGGTGAGCTTCAATGTCTGGCTCGAGAGTTCGTTTCGAGGTATTTGCCCGGAGTAGGATTCCGGCCGCCGTGCTCTCAGATTTGA 729 52.67 KKKKKKKNTTNTKTPLPYNSPTSNKSHLQNAVMSSAGVHGGGPCGACKFLRRKCVKGCIFAPYFDSEQGAAHFAAVHKVFGASNASKLLLRIPANKRLDACVTLCYEALARVRDPVYGCVAHIFSLQQQVVNLQAELAYIQAKLSTLQRLLPPPLHSPSSTARHNPLPETTPASDMGLLPNVPMLLDPLQTQLGCNETTSSFLNPIDHEDEMDEDGELQCLAREFVSRYLPGVGFRPPCSQI 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 126154 128165 + CmaCh17G000290.1 Cma17g00029 311924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00029 242 Pfam Lateral organ boundaries (LOB) domain 43 141 IPR004883 -
Cma17g00029 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 37 231 - -
Cma17g00029 242 ProSiteProfiles LOB domain profile. 42 144 IPR004883 -
Cma17g00029 242 MobiDBLite consensus disorder prediction 1 26 - -
Cma17g00029 242 MobiDBLite consensus disorder prediction 11 26 - -
Cma17g00029 242 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 37 231 - -
Cma17g00029 242 MobiDBLite consensus disorder prediction 154 174 - -
Cma17g00029 242 MobiDBLite consensus disorder prediction 154 168 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00953 Cma17g00029 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00953 Cma-Chr8:5951982 Cma17g00029 Cma-Chr17:126154 8.55E-65 dispersed
Cma14g01981 Cma-Chr14:13925865 Cma17g00029 Cma-Chr17:126154 2.51E-56 dispersed
Cma17g00029 Cma-Chr17:126154 Cma19g00080 Cma-Chr19:461193 7.16E-51 dispersed
Cma17g00028 Cma-Chr17:119807 Cma17g00029 Cma-Chr17:126154 3.17E-66 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36621 PF03195 LOB 5.80E-36 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00029 - - csv:101220840 356.681