Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00037 ATGAGAAATTCCAACAAGCCAAGAAATGAAGAAAAGGAGTTTCTCTCTCTTCGAATCCAGTCCCCGGTCGTTGCGCTCTCCCGCATCGGTCCCAACATCCATCGCCACGCCCCGTCGCGTTCTCCCTTCGCTCGCAGCCAGCATTCAACTCTGTCTTCCTCAGATTTACACTTTCCATCCCCCTCACTTCAGATCTGTCAAATGGATGGACCAACTGGTCGCGGTGGTAGTGGCATGGATATGAATTTACCGAACTATAAACTTGGAAAGACCCTTGGCATAGGTTCATTTGGGAAAGTGAAAATTGCCGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAATTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGGTTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACTCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAACAGATAATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCGGAGAACTTGCTTTTAGACTCAAAATATAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGAGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCCGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTCATTTTGTATGCCCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATCCCTAGTATGCTGGTGGTTGACCCAATGAAGCGCATCACGATCCCTGAGATTCGCCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATTCAACAGGCGAAAAAGATTGATGAAGACATTCTTCAGGAAGTTGTAAAAATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACAGGATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACCAGATTCAATTCTATGCACCCTGGTGATCCTACAAGTCCTGCTGTAGGACACCGGCTTCCTGGATATATGGATTATCAAGGAATGGGCCTAAGATCACAGTTTCCCGTTGAGAGGAAGTGGGCTCTAGGATTACAGTCTCGAGCTCATCCCCGTGAAATTATGACCGAAGTCCTTAAGGCCCTACGAGAGCTCAATGTGGCGTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAGTCTACCATCATTGAAAATGACGGCGTAGTAAAATCGCCGAACGTTATTAAGTTCGAAGTTCAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTTCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTCCGCGTCCTCTAA 1749 44.71 MRNSNKPRNEEKEFLSLRIQSPVVALSRIGPNIHRHAPSRSPFARSQHSTLSSSDLHFPSPSLQICQMDGPTGRGGSGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTIQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETRFNSMHPGDPTSPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 160761 168794 - CmaCh17G000370.1 Cma17g00037 311932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00037 582 Pfam Kinase associated domain 1 539 581 IPR001772 -
Cma17g00037 582 PANTHER SERINE/THREONINE KINASE 75 581 - -
Cma17g00037 582 SMART serkin_6 86 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00037 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cma17g00037 582 SMART uba_6 361 398 IPR015940 -
Cma17g00037 582 ProSiteProfiles Protein kinase domain profile. 86 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00037 582 MobiDBLite consensus disorder prediction 35 55 - -
Cma17g00037 582 Gene3D Kinase associated domain 1, KA1 462 580 - -
Cma17g00037 582 SUPERFAMILY KA1-like 395 581 IPR028375 -
Cma17g00037 582 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 359 399 IPR015940 -
Cma17g00037 582 Gene3D Transferase(Phosphotransferase) domain 1 78 419 - -
Cma17g00037 582 Pfam UBA/TS-N domain 360 396 IPR015940 -
Cma17g00037 582 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 75 581 - -
Cma17g00037 582 CDD STKc_AMPK_alpha 83 338 - -
Cma17g00037 582 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 533 581 IPR001772 -
Cma17g00037 582 CDD UBA_SnRK1_plant 360 400 - -
Cma17g00037 582 CDD AMPKA_C 456 579 - -
Cma17g00037 582 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Cma17g00037 582 SUPERFAMILY Protein kinase-like (PK-like) 83 356 IPR011009 -
Cma17g00037 582 Pfam Protein kinase domain 86 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00037 582 SUPERFAMILY UBA-like 348 397 IPR009060 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00888 Cma-Chr2:5267811 Cma17g00037 Cma-Chr17:160761 5.68E-43 dispersed
Cma11g01008 Cma-Chr11:5451884 Cma17g00037 Cma-Chr17:160761 0 dispersed
Cma17g00037 Cma-Chr17:160761 Cma13g00516 Cma-Chr13:5462466 2.31E-86 dispersed
Cma17g00037 Cma-Chr17:160761 Cma08g00958 Cma-Chr8:5983261 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69216 PF00069 Pkinase 2.70E-80 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00037 K07198 - csv:101211720 1001.12