Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00042 ATGGATTACCCTCTCCTTGGATTCGTGCTCGTTATCGTCGTCGTATGTTGTCATTCCGTCGAACTCGTCCTTCTTGGGGCTGTTGCTGTCGTTGCCGCCATGTTCAGAGAAGTAAAAGCTCAGTTCCCGCCCGCTTCACTGAGCTTTGAAACAAATAATGAAATTGGAAAAGTATTTAGATTTGGAGAGAAACGAGGAGGAGAGTTTCTCTCTCTTCGAATCCTCTCCACAGGTCGTTGCGCTCTCCCTTCACCAGCAAGCATTCAGCAATTTCTTCATCAGATCTACACTCTCCACCGCCCTCATTCTCAGTTGAACATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAAGTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAGCACAACAAACAAAAGAGTTGCTCGCTTCCTGTGAGAGTATTGAATGGCAGGTGGACGAATTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATCATGCGGAACTTGAGAAACGAAGGAGGTGGACGAGTACAGCTAGGATGCAGGTTGGAAATGTTAAGAAAGTAGTAGGAGCTGGAAAGGAGCAAACTGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCCAATGCACTTGAAACAGAAGAATCAAACTTATATTCAGCCCACCAAGAAAATGATGACTTCATCTCATCCGAATCAGATAGACAGCTGCTTCTAATAAGGCAGCAGGACGAGGAGTTGGATGAATTGAGTGCGAGTGTGGTGAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAGCTCCTTGCACAGGATAAAATTATTGACAACCTAGGGATGGAAATGGACAGTACATCGAATCGTCTTGATTTTGTTCAGAAAAAAGTAGCTGTGGTGATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTATTCTTGGTAGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCCTCACCTAG 1059 44.95 MDYPLLGFVLVIVVVCCHSVELVLLGAVAVVAAMFREVKAQFPPASLSFETNNEIGKVFRFGEKRGGEFLSLRILSTGRCALPSPASIQQFLHQIYTLHRPHSQLNMPSAQDPFYVVKDEIQESIDKVQSSFHQWERISSDPGERAQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDHAELEKRRRWTSTARMQVGNVKKVVGAGKEQTGTASASGMRRELMRLPNALETEESNLYSAHQENDDFISSESDRQLLLIRQQDEELDELSASVVRIGGVGLTIHEELLAQDKIIDNLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 187111 191264 - CmaCh17G000420.1 Cma17g00042 311937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00042 352 CDD SNARE_Qc 263 320 - -
Cma17g00042 352 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 260 322 IPR000727 -
Cma17g00042 352 PANTHER SYNTAXIN PROTEIN 107 351 - -
Cma17g00042 352 Pfam Syntaxin 6, N-terminal 112 205 IPR015260 GO:0016020|GO:0048193
Cma17g00042 352 SUPERFAMILY SNARE fusion complex 259 322 - -
Cma17g00042 352 Gene3D - 108 210 - -
Cma17g00042 352 SUPERFAMILY t-snare proteins 111 206 IPR010989 GO:0016020|GO:0016192
Cma17g00042 352 Gene3D - 267 331 - -
Cma17g00042 352 ProSitePatterns Syntaxin / epimorphin family signature. 266 305 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma17g00042 352 Pfam SNARE domain 297 348 IPR000727 -
Cma17g00042 352 PANTHER SYNTAXIN 107 351 IPR045242 -
Cma17g00042 352 SMART tSNARE_6 255 322 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00944 Cma-Chr1:5997055 Cma17g00042 Cma-Chr17:187111 4.50E-121 dispersed
Cma01g00945 Cma-Chr1:6005532 Cma17g00042 Cma-Chr17:187111 8.45E-08 dispersed
Cma01g01111 Cma-Chr1:8131197 Cma17g00042 Cma-Chr17:187111 3.16E-09 dispersed
Cma16g00924 Cma-Chr16:7034135 Cma17g00042 Cma-Chr17:187111 2.42E-07 dispersed
Cma17g00042 Cma-Chr17:187111 Cma09g00975 Cma-Chr9:4947413 7.37E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00042 K08500 - csv:101212527 400.979