Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00057 ATGGCTACTTTAAACTTAGGCTCAGCTTCTCACTTTGTTGACCAGCTTCAACAACGCCCTGATCTCCACTTAGATTCACCGCCCAGCTCCGATCATGTCACCAATCTCAACCACTTCAACGGCAGCGGCGGCTCCGGTGGTAGTGGAGATGCTATGGTTCGTCGACCTAGGGGTCGCCCAGCCGGGTCCAAGAACAAGCCAAAGCCGCCCGTGATCATCACGCGCGAGAGCGCTAATACCCTCCGAGCTCATATCTTGGAAATCGGTAGCGGATATGATGTGTTCGAGGCTGTGGCTGGCTATGCACGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGAAGTGGGATAGTGAATAATGTTAGCTTACGACAACCGGCTGCGGCTGGATCCGTGTTGACGTTGCAAGGGAGGTTTGAGATTTTGTCCCTATCGGGATCGTTCTTACCGCCACCTGCTCCACCAGGTGCTACTAGTCTCACGATTTTCTTAGCCGGAGGTCAAGGACAAGTGGTCGGAGGGAATGTCGTGGGAGCTTTGATTGCATCGGGGCCTGTTATCGTTATAGCATCATCGTTCGGCAACGTTGCATACGAGAGGCTACCGTTGGATGAAGAAGAATTGTCGATGCCCACAGCTGGTGGTGACGGAGATGGAGGCGAGGGCGGGGGCGGTGATGGCCACGACAACCCTTTTCCCGACGGATCTTCGGGTTTGCCCTTTCTAAATCTGCCTATGAATATGCCAAATCAGAATCAATTTTTTGGTTGA 771 53.44 MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVTNLNHFNGSGGSGGSGDAMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEIGSGYDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFGNVAYERLPLDEEELSMPTAGGDGDGGEGGGGDGHDNPFPDGSSGLPFLNLPMNMPNQNQFFG 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 253494 254837 + CmaCh17G000570.1 Cma17g00057 311952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00057 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 253 IPR014476 GO:0003680
Cma17g00057 256 MobiDBLite consensus disorder prediction 22 44 - -
Cma17g00057 256 Gene3D - 81 211 - -
Cma17g00057 256 MobiDBLite consensus disorder prediction 208 244 - -
Cma17g00057 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 193 IPR005175 -
Cma17g00057 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 211 - -
Cma17g00057 256 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
Cma17g00057 256 MobiDBLite consensus disorder prediction 20 71 - -
Cma17g00057 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 253 - -
Cma17g00057 256 CDD DUF296 82 165 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g02146 Cma17g00057 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01130 Cma-Chr6:7608057 Cma17g00057 Cma-Chr17:253494 4.83E-63 dispersed
Cma16g01151 Cma-Chr16:8853135 Cma17g00057 Cma-Chr17:253494 2.76E-88 dispersed
Cma17g00027 Cma-Chr17:116958 Cma17g00057 Cma-Chr17:253494 3.93E-65 dispersed
Cma17g00057 Cma-Chr17:253494 Cma19g00242 Cma-Chr19:1713777 1.57E-90 dispersed
Cma14g01956 Cma-Chr14:13756219 Cma17g00057 Cma-Chr17:253494 1.64E-98 wgd
Cma17g00057 Cma-Chr17:253494 Cma08g00980 Cma-Chr8:6130529 2.40E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00057 - - csv:101203160 417.157