Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00057 | ATGGCTACTTTAAACTTAGGCTCAGCTTCTCACTTTGTTGACCAGCTTCAACAACGCCCTGATCTCCACTTAGATTCACCGCCCAGCTCCGATCATGTCACCAATCTCAACCACTTCAACGGCAGCGGCGGCTCCGGTGGTAGTGGAGATGCTATGGTTCGTCGACCTAGGGGTCGCCCAGCCGGGTCCAAGAACAAGCCAAAGCCGCCCGTGATCATCACGCGCGAGAGCGCTAATACCCTCCGAGCTCATATCTTGGAAATCGGTAGCGGATATGATGTGTTCGAGGCTGTGGCTGGCTATGCACGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGAAGTGGGATAGTGAATAATGTTAGCTTACGACAACCGGCTGCGGCTGGATCCGTGTTGACGTTGCAAGGGAGGTTTGAGATTTTGTCCCTATCGGGATCGTTCTTACCGCCACCTGCTCCACCAGGTGCTACTAGTCTCACGATTTTCTTAGCCGGAGGTCAAGGACAAGTGGTCGGAGGGAATGTCGTGGGAGCTTTGATTGCATCGGGGCCTGTTATCGTTATAGCATCATCGTTCGGCAACGTTGCATACGAGAGGCTACCGTTGGATGAAGAAGAATTGTCGATGCCCACAGCTGGTGGTGACGGAGATGGAGGCGAGGGCGGGGGCGGTGATGGCCACGACAACCCTTTTCCCGACGGATCTTCGGGTTTGCCCTTTCTAAATCTGCCTATGAATATGCCAAATCAGAATCAATTTTTTGGTTGA | 771 | 53.44 | MATLNLGSASHFVDQLQQRPDLHLDSPPSSDHVTNLNHFNGSGGSGGSGDAMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEIGSGYDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFGNVAYERLPLDEEELSMPTAGGDGDGGEGGGGDGHDNPFPDGSSGLPFLNLPMNMPNQNQFFG | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 253494 | 254837 | + | CmaCh17G000570.1 | Cma17g00057 | 311952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00057 | 256 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 253 | IPR014476 | GO:0003680 | |
Cma17g00057 | 256 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
Cma17g00057 | 256 | Gene3D | - | 81 | 211 | - | - | |
Cma17g00057 | 256 | MobiDBLite | consensus disorder prediction | 208 | 244 | - | - | |
Cma17g00057 | 256 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 82 | 193 | IPR005175 | - | |
Cma17g00057 | 256 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 78 | 211 | - | - | |
Cma17g00057 | 256 | ProSiteProfiles | PPC domain profile profile. | 78 | 214 | IPR005175 | - | |
Cma17g00057 | 256 | MobiDBLite | consensus disorder prediction | 20 | 71 | - | - | |
Cma17g00057 | 256 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 1 | 253 | - | - | |
Cma17g00057 | 256 | CDD | DUF296 | 82 | 165 | IPR005175 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma14g02146 | Cma17g00057 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01130 | Cma-Chr6:7608057 | Cma17g00057 | Cma-Chr17:253494 | 4.83E-63 | dispersed | |
Cma16g01151 | Cma-Chr16:8853135 | Cma17g00057 | Cma-Chr17:253494 | 2.76E-88 | dispersed | |
Cma17g00027 | Cma-Chr17:116958 | Cma17g00057 | Cma-Chr17:253494 | 3.93E-65 | dispersed | |
Cma17g00057 | Cma-Chr17:253494 | Cma19g00242 | Cma-Chr19:1713777 | 1.57E-90 | dispersed | |
Cma14g01956 | Cma-Chr14:13756219 | Cma17g00057 | Cma-Chr17:253494 | 1.64E-98 | wgd | |
Cma17g00057 | Cma-Chr17:253494 | Cma08g00980 | Cma-Chr8:6130529 | 2.40E-127 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00057 | - | - | csv:101203160 | 417.157 |