Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00079 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTCTGGTCCTCCACTCCTGTTGACGACGATCGCCTCCACCGCTACACTTCGGAGCCGGCCACCACCACGTCGTCGCCGGAACCCGTCGTTGAACCTCCGGTTCCGGTTCCTCCTCCGTCTGCGAGCACCGTCGTTAGAACCGAGTCTCCCAAGTCGGATACTAGAGACTCCAGGGTTAATAACAATGTGAGCAACGACGATAATGACACTTCCTCTGGCCCTTCTGCTGAGGACGTATCTCGCCAGGCACAGCTTCTTGTTGAGCTATCGAAGAAGGTCATAAATCTACGTGAATTGCGTAAAATTGCGTCTCAGGGTATATCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGCGCTCTGGACGTCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAAGAGCTTTTGATGAATCCTTCAGAAATTTCAAGGAGGTTGGAGAAAGCGAAAAGTTACGAGCATGATGAAACGAACAGAGGTCCACTCTCAAGGTTAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACCAGCATTTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGAGATGAGGCTCTGAGAAACATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTTCAAGGGATGAATGAAATTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAGGATAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGCTTTGTTGAGTTGTTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTGGGAATTCGCGCCACAATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAGGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTCTTGACCCAGGAGTTTAATTTTGCAGACAGCCTTCATATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGGAAACACTTCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCCTACTTGCTGGCGATTTTACAGCTAATCTCAAACTGCTGCAACACTATCCCCCAGCAAACATCAGTCATTTGCTCTACGTTGCGAACAAGTTGCTTGATCTTGCGCTTGGATTTCCTGCTAATGCTTTACGCTTGTATTTGTCGTGCATTCGGAACACTCTCGAGGCCGCTATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCAGAGGTTGAACTAAAGACCAGCTCAGAACTTATTCTCAATCCTATCTTAATATGTAGAAATGAGTCAGAGAAGTGTTTGATTGAGACATCTATAAACTCTCTCCGGATCAGTCTCAAGGTTAAACAGACAGATGAACTGGAGAACATCCTCACTAAAAAGTTCCTACGATTTCTGTCAATGAGGGCAGAAGCTTTCCAGGTGCTGAGAAGAAAACCTGTACAGGGATATGACATTAGCTTTCTCATAACAAACTATCATTGTGAGGAGCTGCAGAAGCAAAAGCTCATTGATTTTATTGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGGGGAAGGCTTGTAGCAACCGAGTTTCTAAAGCAATTCATTTGA 1764 44.16 MVKKRVPDWLNSSLWSSTPVDDDRLHRYTSEPATTTSSPEPVVEPPVPVPPPSASTVVRTESPKSDTRDSRVNNNVSNDDNDTSSGPSAEDVSRQAQLLVELSKKVINLRELRKIASQGISDGPGIRSTVWKLLLGYLPPDRALWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNRGPLSRLEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDEALRNILIVFAKLNPGIRYVQGMNEILAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPPANISHLLYVANKLLDLALGFPANALRLYLSCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELILNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEELQKQKLIDFIDIDKEISELKMSVNTRGRLVATEFLKQFI 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 386769 397095 + CmaCh17G000790.1 Cma17g00079 311974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00079 587 Pfam Rab-GTPase-TBC domain 126 386 IPR000195 -
Cma17g00079 587 Gene3D - 300 421 - -
Cma17g00079 587 SUPERFAMILY Arp2/3 complex subunits 427 586 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cma17g00079 587 MobiDBLite consensus disorder prediction 1 92 - -
Cma17g00079 587 Pfam ARP2/3 complex 20 kDa subunit (ARPC4) 426 585 IPR008384 GO:0005885|GO:0015629|GO:0030041|GO:0034314
Cma17g00079 587 ProSiteProfiles TBC/rab GAP domain profile. 121 364 IPR000195 -
Cma17g00079 587 Gene3D - 425 586 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Cma17g00079 587 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 202 292 - -
Cma17g00079 587 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 227 417 - -
Cma17g00079 587 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 226 - -
Cma17g00079 587 MobiDBLite consensus disorder prediction 69 92 - -
Cma17g00079 587 MobiDBLite consensus disorder prediction 39 53 - -
Cma17g00079 587 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 227 417 - -
Cma17g00079 587 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 226 - -
Cma17g00079 587 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 100 323 IPR035969 -
Cma17g00079 587 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 301 416 IPR035969 -
Cma17g00079 587 SMART tbc_4 116 390 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00079 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 743.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01425 Cma-Chr14:10942629 Cma17g00079 Cma-Chr17:386769 1.42E-28 dispersed
Cma17g00079 Cma-Chr17:386769 Cma08g00248 Cma-Chr8:1398435 1.05E-16 dispersed
Cma17g00079 Cma-Chr17:386769 Cma08g01004 Cma-Chr8:6306752 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g997 . . Bda03g01131 . Bpe04g01074 . Bma04g01171 . . Cmo17g00086 . . . . . . . . . . . . . . Cla06g00785 Cam06g0840 Cec06g0855 Cco06g0869 Clacu06g0843 Cmu06g0815 Cre06g1595 . . . . . Csa02g00897 . . . . . . . . . . . . . . Cma17g00079 . Car17g00073 Cpe12g00073 . Bhi12g01466 . . . . . Lcy13g0479 . . . . . . . Lsi09g01113 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00079 Cma_Chr17 FPKM 5.19489 5.455345 5.643244 6.80672 5.741523 5.968343 6.059118 11.724981 11.251633 11.150296