Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00080 ATGGCGGACGTCTTAGGCGACGCCGGTGGCGGCGGAACCAAGGCCACAAAGCTTCCGATTCCAGGAAAGAGGAATATACTCATTACCAGCGCTCTTCCATACGTCAATAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTAGGTACTGTCGTCTTAGAGGTTATAACGCTATTTACATATGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGTTCTCCAAAAGAGATTTGTGACAAGTACCACAAAATTCACAAAGAAGTTTACGATTGGTTTGGTATTAGTTTTGATGAATTTGGTCGCACATCATCATCACAGCAGACTGAAGTTTGTCAAGAAATATTTGGAAAACTATTGGAGAACAATTGGCTTTCTGAGAACACGATGCAACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTTGTTGAAGGCATTTGTCCTACTCCAGGGTGTGAGTATGACTCTGCACGTGGTGATCAATGTGAAAAGTGCGGGAAACTTCTTAATCCAACGGAATTGAAAGATCCCAGGTGCAAGGTCTGTCAAACATCCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGATAAACTTGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACAAGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTAGAAAGGTTCAAGGACAAGGTCTTCTATGTTTGGTTTGATGCACCAATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAGAATGTGGAGCTTTTTCAATTCATGGGCAAGGATAATGTTCCTTTCCACACTGTTATGTTTCCTTCTACACTGCTCGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATACTTAAATTATGAAGCAGGAAAATTTTCTAAGAGTAAGGGCATTGGAGTTTTTGGTAACGATGCAAAAGATACAAATATTTCTGCAGAAGTATGGAGATATTACTTATTAGGCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTCAATGGCGAGTTGTTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCCAAACCTTTAGGGCAGGGTTATGGTTCCATAATTCCTGATGCTCCTGACGCGGACTCTCATGGATTAACATTGGGTTTGGCTGAAAAAGTTGATAAATACGTAGACCAATATGTGGAATCAATGGAGAAGGTTAAACTAAAACAAGGCCTAAAAGCTGCAATGGCTATTTCAAGCGAGGGAAATACATATTTGCAATCATCCCAATTCTGGAATCTTTACAAGGCGGACAAACCTTCGTGCAATATTGTTATGAGAACTTCATCTGGACTTGTGCATCTTCTGGCATGTTTATTAGAACCTTTCATGCCTTCTTTCTCAGATGAGGTGTTTAGGCAGCTGGATTTACCTCTGGAACGGCGTATTTCGCTCTGCGAAGAGAAAGGAGACATCGAGAGAGCAAAGCAACCGTGGAAGACTCTACCTTCTGGTCATAAGATTGGCACACCACACCCATTATTCAAAGAATTGAAAGACGAAGAAGTAGAACTATACAGAGACAAGTTTGCCGGAAGTCAGGCTCAACGCATTGTTAAAGCAGAAGCAGAAGCAGAAGCAGAAAAGCTTGCTGCTCACCTAAAAAAAACTAACGTTTCAGGCAGTGAAAAAAAGCAACAGGCAAAATCCTCCACAGGCCGCAAACCGAAAGCTGCTGGTGGTGGTGGTGCTGTGGAAGCAGGAATTACGATAACAAGACTGGATATCCGAGTAGGCTTAATTACTAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGGAAGAAATCGATGTGGGAGAAGCGCAGCCTCGAACCGTTGTCAGTGGACTGGTCAACTACATACCTCTTCAAGAGATGCAGAACCGGAAGGTCTGTGTTCTTTGCAACTTGAAGCCGGCGTCCATGAGGGGAATTAAATCCCAAGCCATGGTTCTGGCTGCGTCCAATAGCGACCACACCAAGGTTGAATTAGTGGAGCCACCCAAAGACGCCAATGTCGGAGAAAGAATAAAATTCCCAGGATTCGAAGGTGAGCCCGACGACGTACTGAACCCGAAGAAAAAGGTATGGGAGACGCTGCAAGTGGATTTGGCTATCAACACAGAGGGCGTGGCATGTTTTAAAGATATACCATTTAACACGTCGGCTGGCATTTGCAAAGTTTCTTCCATTTCCAGTGGCTCTATCTGGTAG 2445 43.56 MADVLGDAGGGGTKATKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHKIHKEVYDWFGISFDEFGRTSSSQQTEVCQEIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTSPRIRDTNHMFLELPLLRDKLEEYINKMSVAGSWSQNAIQATQAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNISAEVWRYYLLGNRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDAPDADSHGLTLGLAEKVDKYVDQYVESMEKVKLKQGLKAAMAISSEGNTYLQSSQFWNLYKADKPSCNIVMRTSSGLVHLLACLLEPFMPSFSDEVFRQLDLPLERRISLCEEKGDIERAKQPWKTLPSGHKIGTPHPLFKELKDEEVELYRDKFAGSQAQRIVKAEAEAEAEKLAAHLKKTNVSGSEKKQQAKSSTGRKPKAAGGGGAVEAGITITRLDIRVGLITKAQKHPDADSLYVEEIDVGEAQPRTVVSGLVNYIPLQEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPDDVLNPKKKVWETLQVDLAINTEGVACFKDIPFNTSAGICKVSSISSGSIW 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 397533 405667 - CmaCh17G000800.1 Cma17g00080 311975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00080 814 PANTHER METHIONINE--TRNA LIGASE 13 813 IPR023458 GO:0004825
Cma17g00080 814 ProSiteProfiles tRNA-binding domain profile. 652 755 IPR002547 GO:0000049
Cma17g00080 814 Gene3D - 409 579 - -
Cma17g00080 814 Gene3D HUPs 25 408 IPR014729 -
Cma17g00080 814 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 13 813 - -
Cma17g00080 814 CDD MetRS_core 25 395 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Cma17g00080 814 SUPERFAMILY Nucleic acid-binding proteins 654 811 IPR012340 -
Cma17g00080 814 CDD Anticodon_Ia_Met 404 537 IPR041872 -
Cma17g00080 814 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma17g00080 814 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 412 592 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma17g00080 814 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 PRINTS Methionyl-tRNA synthetase signature 277 288 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 PRINTS Methionyl-tRNA synthetase signature 312 327 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 PRINTS Methionyl-tRNA synthetase signature 407 418 IPR033911 GO:0004825|GO:0006431
Cma17g00080 814 Coils Coil 602 622 - -
Cma17g00080 814 TIGRFAM metG: methionine--tRNA ligase 26 562 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Cma17g00080 814 CDD tRNA_bind_EMAP-II_like 651 754 - -
Cma17g00080 814 MobiDBLite consensus disorder prediction 615 644 - -
Cma17g00080 814 Gene3D - 652 814 IPR012340 -
Cma17g00080 814 Gene3D - 161 197 IPR029038 -
Cma17g00080 814 Pfam tRNA synthetases class I (M) 26 420 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma17g00080 814 SUPERFAMILY Nucleotidylyl transferase 23 405 - -
Cma17g00080 814 Hamap Methionine--tRNA ligase [metG]. 24 591 IPR023458 GO:0004825
Cma17g00080 814 Pfam Anticodon binding domain of methionyl tRNA ligase 450 596 IPR041872 -
Cma17g00080 814 Pfam Putative tRNA binding domain 658 752 IPR002547 GO:0000049
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00080 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1465.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02629 Cma-Chr4:17953221 Cma17g00080 Cma-Chr17:397533 2.82E-47 dispersed
Cma07g01373 Cma-Chr7:7837589 Cma17g00080 Cma-Chr17:397533 1.99E-40 dispersed
Cma04g00101 Cma-Chr4:499342 Cma17g00080 Cma-Chr17:397533 2.78E-47 transposed
Cma17g00080 Cma-Chr17:397533 Cma08g01003 Cma-Chr8:6298134 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00080 Cma_Chr17 FPKM 6.30434 7.652344 4.883221 5.140941 1.283475 0.986934 1.047091 10.448269 9.110312 8.064145