Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00083 ATGATTCCCCCGAAGCGAAAGAAATGGACTGAAGCTGAGGAGAGGACCTTGATTGATAAGTATGGAGAAATGGTCTCTGATGGAACCCTAGCTAAGATGAAAACCCGTGAGAAAAAGTTTAGGCCAATTGCGAATTATGTGAATTCTGTGCACCATGTTCATGATTCTTTGACGTATCCATGGCAGTGGTCTTGGAAAGATGTTTCTACTAAGGTCCAGAACATGAGGCACCAATATTTGCTTGTGAAGCAGAAGATTAAGAAACCCGAATCCGGGGTTGAAAACTCAGGTGGGGACTCAAAGGAAGATTATGATTGGATGGATGGTGTAACCTATTGGTCAAACTTCTTGAGATATAAGGATGTTTTTGGGGATGTAGCTGTGGCAAATAGCAGTTATAATGATTTGACAGTCGTTTCGAGTAGTGACCGGGGGAATGTCGACCAGTTTTTGGAGGTGAGTAGAGAAATGGATATGTTGGATTTTCCTCATATGGGGCATTCTGGGGGAGGGAACTTCACTGCTGGGATTGATGGTGTTGACAATGAAGTGATGGGTTTGAGGTTTGAATTCGACGGGGACGAAGCAGAAGAAAACTTTAACGATAATGATCAGCTGAAGGAGGATGGAGAGAACAGCTTTTTCTGTGAAGCAGTTGATCCTAAGAAGAACATCTTGAAGAAGAAGAAGAGGAAGGTGATGAAGAGGTTGGAGAAGAAAGCATGGGGATTTCTCGTGAACCAGCTCGGACGGTTGAAGGATATGGAGGCTCAGTATGAGAAACGTGAGGTGGAAAGAGAACAGGAGCGTCAGAGGTGCGAATGCTTAAGATTCGAAATGGAGAAAAAATGGGAACAAAAATTGGAGGAAAGGGAAGCGCAAAGGGCCGAGAGGGAGAAAGTCCGAGACAAGTTGCGAAAACAGAGAATTCAAGAGTGGGAAGCTATGGAGAAGGAGAGAGTGGAGATAGAAAGAAGAAGAGAGGAGAAATTGAACCATGAGAGAGAATGGGAGGAGAGGATGAGCAAGAGAAGGTTAGAATGGAAGAACAGGATCGACAATATGTTGAACCAACACCGAGCTGAAATGAATCAGATTCAGACTCGTATGCTCCACGAGCAACAAAACCTTACCGGTCAATTACTCGGTATTATCTCTCAATGGACTGCTCATCCTTCTGCACTCTCTGATCATACTAGTCCTAGTAACCATTATCTTTCACAAATGATGCAAAATTTACATCATGTGAACGGGATTGTTCACGATGGCACGAGAGTTGAAACAGACAACCAAGACGATCAATTTATCGTCGATGGTTGA 1320 43.64 MIPPKRKKWTEAEERTLIDKYGEMVSDGTLAKMKTREKKFRPIANYVNSVHHVHDSLTYPWQWSWKDVSTKVQNMRHQYLLVKQKIKKPESGVENSGGDSKEDYDWMDGVTYWSNFLRYKDVFGDVAVANSSYNDLTVVSSSDRGNVDQFLEVSREMDMLDFPHMGHSGGGNFTAGIDGVDNEVMGLRFEFDGDEAEENFNDNDQLKEDGENSFFCEAVDPKKNILKKKKRKVMKRLEKKAWGFLVNQLGRLKDMEAQYEKREVEREQERQRCECLRFEMEKKWEQKLEEREAQRAEREKVRDKLRKQRIQEWEAMEKERVEIERRREEKLNHEREWEERMSKRRLEWKNRIDNMLNQHRAEMNQIQTRMLHEQQNLTGQLLGIISQWTAHPSALSDHTSPSNHYLSQMMQNLHHVNGIVHDGTRVETDNQDDQFIVDG 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 419246 420565 - CmaCh17G000830.1 Cma17g00083 311978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00083 439 Coils Coil 252 272 - -
Cma17g00083 439 Coils Coil 349 376 - -
Cma17g00083 439 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE-RELATED 1 439 - -
Cma17g00083 439 Coils Coil 288 311 - -
Cma17g00083 439 Coils Coil 316 336 - -
Cma17g00083 439 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE 1 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00083 - - - jre:109008449 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00083 Cma-Chr17:419246 Cma08g01001 Cma-Chr8:6282902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g941 . Blo12g00106 Bda03g01136 . Bpe04g01079 . Bma04g01165 . . Cmo17g00090 . . . . . . . . . . . . . . Cla06g00780 Cam06g0834 Cec06g0849 Cco06g0859 Clacu06g0837 Cmu06g0808 Cre06g1589 Cone14ag0243 Cone15ag0261 . . . Csa02g00901 . . . . . . . . . . . . . . Cma17g00083 . Car17g00078 Cpe12g00077 . . . . . . . . . . . . . . . Lsi09g01119 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008410 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00083 Cma_Chr17 FPKM 12.778788 14.625102 10.048947 10.860072 10.185383 8.788458 9.972541 13.338718 14.074131 11.461672