Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00085 ATGCGTAGCTGCGGTTTGGCTTTATCAGGTACCGATTCACGGTGCTATTTACCGGCGATGCCTCCGATCTTTTCTCCGATGAGAGCCTGTCCACTGGATGGAAATTCGCAGGTTTTGTTCCCTAAATTGACACGGCCTCCTTCTGCTTGCGTCAGAGCAAAGGCTACGGTTGTCAAAGAGACGCTAGTCTCCGACGCCATCGAGATAAGCTTCTACGAGCTTTTAGGAGTGCCGGAGTCGGGGTCGATGGTGGAGATTAAGCAGGCCTACAAGCAGATGGCTCGGAAATACCATCCGGACGTCTCGCCACCGGACCGGATCGAGGAGTATACAAGGAAGTTCATCAAGGTTCAGGAGGCGTACGAGACGTTATCGGATCCTGTTATGAGAGATTTGTATGATAGAGACATGGCGAGAGGTCTTCACCTTGCTTTCTCTGCTCGAAGACGGGGCTACAACCATGAGGAAATGGAAGAGAAAGGTGGGTGGAAGAGCCGTTGGCAGGATCAGCTATCAGAATTGAAGAGAAGAAGCATGAATAAAAATTCAAGAGCAAACATGTCATGGGGAGCTCGAATGCGCAGGCAAGGGGACGAGCTTCACGACGATGATAACCCGTAA 621 50.89 MRSCGLALSGTDSRCYLPAMPPIFSPMRACPLDGNSQVLFPKLTRPPSACVRAKATVVKETLVSDAIEISFYELLGVPESGSMVEIKQAYKQMARKYHPDVSPPDRIEEYTRKFIKVQEAYETLSDPVMRDLYDRDMARGLHLAFSARRRGYNHEEMEEKGGWKSRWQDQLSELKRRSMNKNSRANMSWGARMRRQGDELHDDDNP 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 425346 426985 + CmaCh17G000850.1 Cma17g00085 311980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00085 206 PRINTS DnaJ domain signature 72 90 IPR001623 -
Cma17g00085 206 PRINTS DnaJ domain signature 90 105 IPR001623 -
Cma17g00085 206 PRINTS DnaJ domain signature 109 129 IPR001623 -
Cma17g00085 206 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Cma17g00085 206 SUPERFAMILY Chaperone J-domain 69 143 IPR036869 -
Cma17g00085 206 Pfam DnaJ domain 71 134 IPR001623 -
Cma17g00085 206 MobiDBLite consensus disorder prediction 174 206 - -
Cma17g00085 206 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 49 199 - -
Cma17g00085 206 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 199 - -
Cma17g00085 206 SMART dnaj_3 69 129 IPR001623 -
Cma17g00085 206 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Cma17g00085 206 Gene3D DnaJ domain 68 192 IPR036869 -
Cma17g00085 206 CDD DnaJ 71 126 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00085 - - - cpep:111807510 407.527
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01907 Cma17g00085 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00682 Cma-Chr3:5639930 Cma17g00085 Cma-Chr17:425346 5.24E-16 dispersed
Cma14g01907 Cma-Chr14:13482500 Cma17g00085 Cma-Chr17:425346 5.11E-68 dispersed
Cma17g00085 Cma-Chr17:425346 Cma04g00823 Cma-Chr4:4214669 6.97E-12 dispersed
Cma19g00267 Cma-Chr19:1910701 Cma17g00085 Cma-Chr17:425346 1.71E-22 transposed
Cma17g00085 Cma-Chr17:425346 Cma06g01200 Cma-Chr6:8022743 7.24E-68 wgd
Cma17g00085 Cma-Chr17:425346 Cma08g00998 Cma-Chr8:6251980 1.42E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g931 . . . . . . . . . Cmo17g00091 . Cma14g01907 Car06g01052 Car14g01708 Sed02g1527 Cpe08g00413 Cpe03g01608 Bhi01g00197 Tan10g0493 Cmetu06g2051 Lac12g2015 Hepe05g1777 . Lcy11g1792 . . . . . . . Cone14ag0245 Cone15ag0262 Cone7ag0410 . Lsi05g01860 . . Cme06g00366 . . Bda11g00324 Bda13g00476 . Bpe13g00869 Bma02g01194 Bma06g01272 Sed09g0169 Cmo06g01237 Cmo14g01962 . Cma17g00085 . Car17g00080 Cpe12g00078 . Bhi12g01476 Tan06g2282 Cmetu05g1668 . Hepe03g0378 . . Cla05g00330 Cam05g0360 Cec05g0364 Cco05g0366 Clacu05g0357 Cmu05g0342 Cre05g0405 Lsi09g01122 Csa03g01076 Chy06g00346 Cme05g00736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002087 3 2 2 2 2 2 4 2 1 1 1 1 4 2 1 4 1 3 4 2 1 2 2 2 2 2 2 3 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00085 Cma_Chr17 FPKM 12.105499 14.252259 37.093361 41.432873 13.594874 12.384657 11.258794 13.793607 13.837472 11.759793