Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00095 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATTCCATACCCACCACCGCAGACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAAAAGCTCCATTCTGTCATGGGAACTAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTCCCTTCAACGGCCACCAATGCCTCTTTCGTTCTCAGGAAGTATTATCTTTCGTTGCTTCATCATTTTGAACAGATTTACTTCTTCAAAGCTGTGGGATGGACACCAATAATTTCTGATTCCTCTCTGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACGGCCTCTATGTTACCACCATCAGATAATCAGGCGGCGTCCCAGCCTCCACGTAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGATCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTTCTTCTGAGCAACCTACTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCATCGCCGTCGGAAGAAATATGAGATAAAACGAAGGGATCCCGGTCATCCGAAGCCAAATAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCGGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAATAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAGAATGAAGAAACGGAGGATGGCGAGTCTCCACAAACCCCAGATAATGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGACGAAGAGGAGGAAGAGGAGGACTCGGAAGAAGATGCATCTCCGAAAGGAATTGGTATTGTGGATGTTAATGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACAGTTGGGGACGATAAAGAAGTGTACGCCGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1419 46.02 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISDSSLCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQASSEQPTQPVGVFAKDGTPNAHQHRRRKKYEIKRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERIVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGESPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEDSEEDASPKGIGIVDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 465702 470824 + CmaCh17G000950.1 Cma17g00095 311990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00095 472 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 401 - -
Cma17g00095 472 SMART bright_3 36 127 IPR001606 GO:0003677
Cma17g00095 472 MobiDBLite consensus disorder prediction 230 266 - -
Cma17g00095 472 Pfam ARID/BRIGHT DNA binding domain 41 122 IPR001606 GO:0003677
Cma17g00095 472 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cma17g00095 472 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Cma17g00095 472 Gene3D High mobility group box domain 245 340 IPR036910 -
Cma17g00095 472 Gene3D - 29 129 IPR036431 GO:0003677
Cma17g00095 472 SUPERFAMILY HMG-box 253 333 IPR036910 -
Cma17g00095 472 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Cma17g00095 472 SMART hmgende2 260 329 IPR009071 -
Cma17g00095 472 Coils Coil 310 330 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 390 405 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 424 472 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 152 179 - -
Cma17g00095 472 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cma17g00095 472 CDD HMGB-UBF_HMG-box 261 325 - -
Cma17g00095 472 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 401 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 425 472 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 361 412 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 152 182 - -
Cma17g00095 472 SUPERFAMILY ARID-like 32 136 IPR036431 GO:0003677
Cma17g00095 472 SMART ARID_2 32 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01025 Cma-Chr8:6405677 Cma17g00095 Cma-Chr17:465702 0 dispersed
Cma14g00602 Cma-Chr14:2991873 Cma17g00095 Cma-Chr17:465702 1.57E-09 dispersed
Cma17g00095 Cma-Chr17:465702 Cma09g00079 Cma-Chr9:350994 3.65E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36624 PF01388 ARID 1.40E-17 CL0123 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00095 - - bhj:120068345 800.431