Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00095 ATGGCCTCGACTTCTTTTGCTGGCAGGAAGCAACTGCCAGTGATTGAAGCTACTTCTAGCTGTATTCCATACCCACCACCGCAGACAACATATGAGGATATTGTAGCTAATCCAAATATCTTTATGGCATCCTTGGAAAAGCTCCATTCTGTCATGGGAACTAAGTTCATGATCCCGATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTCCCTTCAACGGCCACCAATGCCTCTTTCGTTCTCAGGAAGTATTATCTTTCGTTGCTTCATCATTTTGAACAGATTTACTTCTTCAAAGCTGTGGGATGGACACCAATAATTTCTGATTCCTCTCTGTGCCCAAGTGCAGCGACGATTCCTACCCAAGGGACGGCCTCTATGTTACCACCATCAGATAATCAGGCGGCGTCCCAGCCTCCACGTAGTACTGCAACTGAACTTCCAGCAGTTGCTCCGGGATCGACATCTCCAGCAGGAGGGTTTCCAGTGATCGGAGTCATTGACGGGAAATTTGATAGCGGATATCTTATTACTGTTACTGTAGGGACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTTCTTCTGAGCAACCTACTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACACCAAATGCTCATCAGCATCGCCGTCGGAAGAAATATGAGATAAAACGAAGGGATCCCGGTCATCCGAAGCCAAATAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTACACCCGGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAATAGTTTACCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAGTCATCAGTGATGCAGTGCCTTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAGAATGAAGAAACGGAGGATGGCGAGTCTCCACAAACCCCAGATAATGATACAAGCTATGTTGAAGGCAACTCCGGAGAGTATAAAATGGAAGTGAAGGAGGAGGACGAAGAGGAGGAAGAGGAGGACTCGGAAGAAGATGCATCTCCGAAAGGAATTGGTATTGTGGATGTTAATGCTTTGGTCGAGGAGGAACAGTGCAAGACGGGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACAGTTGGGGACGATAAAGAAGTGTACGCCGGGGAGTCGGTAATGATGGAGGTGGATGCAAAGGAAGAACCAGAACCAACAACAGACATTCGAGAAAATTAA 1419 46.02 MASTSFAGRKQLPVIEATSSCIPYPPPQTTYEDIVANPNIFMASLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPIISDSSLCPSAATIPTQGTASMLPPSDNQAASQPPRSTATELPAVAPGSTSPAGGFPVIGVIDGKFDSGYLITVTVGTEKLKGVLYQASSEQPTQPVGVFAKDGTPNAHQHRRRKKYEIKRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGDLWNKLKESERIVYQEKAMKDKERYRVEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYADKNEETEDGESPQTPDNDTSYVEGNSGEYKMEVKEEDEEEEEEDSEEDASPKGIGIVDVNALVEEEQCKTGTAEEDVRKESSTVGDDKEVYAGESVMMEVDAKEEPEPTTDIREN 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 465702 470824 + CmaCh17G000950.1 Cma17g00095 311990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00095 472 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 401 - -
Cma17g00095 472 SMART bright_3 36 127 IPR001606 GO:0003677
Cma17g00095 472 MobiDBLite consensus disorder prediction 230 266 - -
Cma17g00095 472 Pfam ARID/BRIGHT DNA binding domain 41 122 IPR001606 GO:0003677
Cma17g00095 472 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Cma17g00095 472 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Cma17g00095 472 Gene3D High mobility group box domain 245 340 IPR036910 -
Cma17g00095 472 Gene3D - 29 129 IPR036431 GO:0003677
Cma17g00095 472 SUPERFAMILY HMG-box 253 333 IPR036910 -
Cma17g00095 472 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Cma17g00095 472 SMART hmgende2 260 329 IPR009071 -
Cma17g00095 472 Coils Coil 310 330 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 390 405 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 424 472 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 152 179 - -
Cma17g00095 472 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Cma17g00095 472 CDD HMGB-UBF_HMG-box 261 325 - -
Cma17g00095 472 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 5 401 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 425 472 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 361 412 - -
Cma17g00095 472 MobiDBLite consensus disorder prediction 152 182 - -
Cma17g00095 472 SUPERFAMILY ARID-like 32 136 IPR036431 GO:0003677
Cma17g00095 472 SMART ARID_2 32 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00095 - - - bhj:120068345 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01025 Cma-Chr8:6405677 Cma17g00095 Cma-Chr17:465702 0 dispersed
Cma14g00602 Cma-Chr14:2991873 Cma17g00095 Cma-Chr17:465702 1.57E-09 dispersed
Cma17g00095 Cma-Chr17:465702 Cma09g00079 Cma-Chr9:350994 3.65E-90 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36624 PF01388 ARID 1.40E-17 CL0123 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00095 Cma_Chr17 FPKM 4.547383 4.057404 3.571228 3.785612 4.669312 3.406405 4.54101 4.203134 3.203953 3.438767