Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00107 ATGGGTGGCCACGGAAAGGTCTTTACATTGGCTGAGGTCTCTCAGCACAATACCCGCCAGGACTGTTGGTTGATCATCAATGGCAAGGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGATGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACTGATGATTTCGAAGATGTGGGTCATAGTGAGAGTGCAAGAGAATCGATGAACAAATACTACGTTGGAGAGATCGACATCTCGACAATCCCTGAACGTTTGACATACACAGCTTCGAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTTCTCCAATTCCTGGTCCCTCTCGCAATCTTGGGTCTGGCAGTCGGTATCCGCTTTTATAGCAAATCAACCTGA 405 48.15 MGGHGKVFTLAEVSQHNTRQDCWLIINGKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESARESMNKYYVGEIDISTIPERLTYTASKQPHYNQDKTTEFIVKLLQFLVPLAILGLAVGIRFYSKST 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 521732 524675 + CmaCh17G001070.1 Cma17g00107 312002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00107 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 86 IPR036400 -
Cma17g00107 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cma17g00107 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cma17g00107 134 PANTHER BNAC04G43300D PROTEIN 1 132 - -
Cma17g00107 134 PANTHER CYTOCHROME B5 1 132 - -
Cma17g00107 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cma17g00107 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cma17g00107 134 Gene3D - 3 85 IPR036400 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00987 Cma-Chr6:6687019 Cma17g00107 Cma-Chr17:521732 3.76E-31 dispersed
Cma06g01244 Cma-Chr6:8291203 Cma17g00107 Cma-Chr17:521732 1.44E-75 dispersed
Cma14g02130 Cma-Chr14:14625342 Cma17g00107 Cma-Chr17:521732 1.01E-42 dispersed
Cma15g01010 Cma-Chr15:6090522 Cma17g00107 Cma-Chr17:521732 1.00E-61 dispersed
Cma14g01890 Cma-Chr14:13376466 Cma17g00107 Cma-Chr17:521732 1.80E-77 wgd
Cma17g00107 Cma-Chr17:521732 Cma19g00162 Cma-Chr19:1082126 1.80E-60 wgd
Cma17g00107 Cma-Chr17:521732 Cma02g01681 Cma-Chr2:9474696 1.30E-62 wgd
Cma17g00107 Cma-Chr17:521732 Cma06g01226 Cma-Chr6:8175526 4.35E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00107 K23490 - csv:101213506 252.292