Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00107 ATGGGTGGCCACGGAAAGGTCTTTACATTGGCTGAGGTCTCTCAGCACAATACCCGCCAGGACTGTTGGTTGATCATCAATGGCAAGGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGATGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACTGATGATTTCGAAGATGTGGGTCATAGTGAGAGTGCAAGAGAATCGATGAACAAATACTACGTTGGAGAGATCGACATCTCGACAATCCCTGAACGTTTGACATACACAGCTTCGAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTTCTCCAATTCCTGGTCCCTCTCGCAATCTTGGGTCTGGCAGTCGGTATCCGCTTTTATAGCAAATCAACCTGA 405 48.15 MGGHGKVFTLAEVSQHNTRQDCWLIINGKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESARESMNKYYVGEIDISTIPERLTYTASKQPHYNQDKTTEFIVKLLQFLVPLAILGLAVGIRFYSKST 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 521732 524675 + CmaCh17G001070.1 Cma17g00107 312002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00107 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 86 IPR036400 -
Cma17g00107 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cma17g00107 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cma17g00107 134 PANTHER BNAC04G43300D PROTEIN 1 132 - -
Cma17g00107 134 PANTHER CYTOCHROME B5 1 132 - -
Cma17g00107 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cma17g00107 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cma17g00107 134 Gene3D - 3 85 IPR036400 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cma17g00107 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00107 K23490 CYB5; cytochrome b5 - csv:101213506 252.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00987 Cma-Chr6:6687019 Cma17g00107 Cma-Chr17:521732 3.76E-31 dispersed
Cma06g01244 Cma-Chr6:8291203 Cma17g00107 Cma-Chr17:521732 1.44E-75 dispersed
Cma14g02130 Cma-Chr14:14625342 Cma17g00107 Cma-Chr17:521732 1.01E-42 dispersed
Cma15g01010 Cma-Chr15:6090522 Cma17g00107 Cma-Chr17:521732 1.00E-61 dispersed
Cma14g01890 Cma-Chr14:13376466 Cma17g00107 Cma-Chr17:521732 1.80E-77 wgd
Cma17g00107 Cma-Chr17:521732 Cma19g00162 Cma-Chr19:1082126 1.80E-60 wgd
Cma17g00107 Cma-Chr17:521732 Cma02g01681 Cma-Chr2:9474696 1.30E-62 wgd
Cma17g00107 Cma-Chr17:521732 Cma06g01226 Cma-Chr6:8175526 4.35E-08 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00107 Cma_Chr17 FPKM 0.0 0.0 0.0 0.0 31.215759 35.011135 25.867954 0.0 0.0 0.0