Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00108 ATGGGGAAGTACATGAGGAAAACCAAGTCATTAGGCGAAGTTGCAGTCATGGAGGTTTCACAGTCCTCTCTTGGGGTTTTGACTAGGGCTAAGACTCTAGCCTTGCGTCGTCTCCAACAATCTCCGACGCCGTCGCCGTCGCCATCTCCGGTTGCTTCTGGTTCTTATCTTCAGCTTAGGAGCCGTAGGCTTGAGAAGCCACCGGTTGTATTTTCTGGCCATGAATCGAAGAGGCAGAAGCAAAGCCCTAAAGAGGGCTGCACGAGAAACCCTAGCCCTAGGGTCAGTTCTAGTTTGAGGCCGGCCATGCCGGAAAAGTCGGTCTCGCTTGGCCGTGTTAATGAAGAGGGGGATCACACGGCGGAGGAGGAGGCGGCGGCGGCGGCAGAGGAATCCGTCGGGAAATTTGATGAAATACATGCGAGTGGAAGTAAGAATGAGAATATTGATTTGGTCATTGAAGAGGCCTCGTTTGGTGAAAATAATTTGGATTTTGAGAGCAGAGAGAGGAGTACTAGGGAATCTACTCCCTCCAGTTTGATAAGGAATCCTGATATCATCAGAACACCCAGTTCTACAACCAGGCCAACGTCCAGCATGATCGAAGCTAACCGTAGAAATCTGTACTCATCTAATCGACACATACCAACAGCAAGTGAAATGGACGAGTTTTTTGCTCTTGCTGAAGAAAAGCAGCAGCGACACTTCATTGAGAAGTACAACTTCGATCCCGTGAAAGATACGCCGCTTCCAGGCCGCTACGAATGGGAGAAGGTAAAATGA 783 49.55 MGKYMRKTKSLGEVAVMEVSQSSLGVLTRAKTLALRRLQQSPTPSPSPSPVASGSYLQLRSRRLEKPPVVFSGHESKRQKQSPKEGCTRNPSPRVSSSLRPAMPEKSVSLGRVNEEGDHTAEEEAAAAAEESVGKFDEIHASGSKNENIDLVIEEASFGENNLDFESRERSTRESTPSSLIRNPDIIRTPSSTTRPTSSMIEANRRNLYSSNRHIPTASEMDEFFALAEEKQQRHFIEKYNFDPVKDTPLPGRYEWEKVK 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 524868 529733 - CmaCh17G001080.1 Cma17g00108 312003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00108 260 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4 1 259 - -
Cma17g00108 260 MobiDBLite consensus disorder prediction 37 108 - -
Cma17g00108 260 MobiDBLite consensus disorder prediction 176 198 - -
Cma17g00108 260 PIRSF CKI_KRP_plant 1 260 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cma17g00108 260 Gene3D p27 202 260 IPR044898 -
Cma17g00108 260 MobiDBLite consensus disorder prediction 165 198 - -
Cma17g00108 260 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 1 259 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cma17g00108 260 MobiDBLite consensus disorder prediction 67 84 - -
Cma17g00108 260 Pfam Cyclin-dependent kinase inhibitor 212 259 IPR003175 GO:0004861|GO:0005634|GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00108 - - - cmo:103496975 378.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01246 Cma17g00108 CCT
Cma14g01889 Cma17g00108 CCT
Cma08g01029 Cma17g00108 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00075 Cma-Chr8:397008 Cma17g00108 Cma-Chr17:524868 5.55E-12 dispersed
Cma17g00108 Cma-Chr17:524868 Cma19g00611 Cma-Chr19:6658073 1.55E-12 dispersed
Cma14g01889 Cma-Chr14:13372199 Cma17g00108 Cma-Chr17:524868 3.16E-51 wgd
Cma17g00108 Cma-Chr17:524868 Cma19g00159 Cma-Chr19:1062954 2.93E-28 wgd
Cma17g00108 Cma-Chr17:524868 Cma02g01684 Cma-Chr2:9485872 1.21E-32 wgd
Cma17g00108 Cma-Chr17:524868 Cma06g01246 Cma-Chr6:8297784 6.78E-54 wgd
Cma17g00108 Cma-Chr17:524868 Cma08g01029 Cma-Chr8:6435483 3.85E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g892 Blo01g00325 Blo12g00119 . Bda08g00030 Bpe04g01065 Bpe14g00840 Bma04g01049 . Cmo08g01001 . Cma06g01246 Cma14g01889 Car06g01072 Car14g01691 Sed02g1489 Cpe08g00395 Cpe03g01588 Bhi01g00243 Tan10g0528 Cmetu06g1184 Lac12g2058 Hepe05g1754 . Lcy11g1768 . . . . . . . . . Cone7ag0385 . Lsi05g01832 Csa02g00930 . Cme06g00388 . . . Bda13g00492 Bpe05g01135 . Bma02g01208 . . Cmo06g01258 Cmo14g01940 Cma08g01029 Cma17g00108 . . Cpe12g00096 Cpe17g00248 . . . . . . . Cla05g00354 Cam05g0385 Cec05g0389 Cco05g0389 Clacu05g0380 Cmu05g0364 Cre05g0428 . Csa03g01103 Chy06g00374 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003251 3 1 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00108 Cma_Chr17 FPKM 11.840358 9.707917 15.952212 15.856326 15.112426 15.882582 14.776216 12.371146 15.764497 13.586345