Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00116 | ATGGCGGCACTTAGTAAGTGGTCTTCTCTGTCTCTGTTTGCCCTTGCAATGGTGTTCTTCGTAACAATCGCTGTGATTCGCAAGGGAGAGACGTCTGAAGTTAGGGTGCAGAATGATGATATGGAGGAAGAACTCAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCTTGTGGAACAGGCAATCCTATTGATGACTGCTGGCGTTGTGACTCAAATTGGCACAGAAACCGTAAACGTCTATCAGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGACGGTCGTTTCTATGTCGTTACTGATTCGAGTGACCACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGAGACATGGTAATTCAATTGAAACAAGAACTCATCATGAATAGTTTCAAAACCATTGATGCTCGAGGAGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCCAGCCATATATGGATTGACCACAATTCGCTCTCTAATTGTGCTGATGGACTTATTGATGCCATTATGGGCTCAACCGCTATCACAATCTCCAACAACCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCAAGGGGCTCATTCAAAGAATGCCAAGGTGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGTAGTGCCAACCCCACCATCAATAAAGGAGATATGTTACTAAACGGTGCATATTTCACCCCATCCGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTAGGCTCCATCACTTCTTCTGCAGGTTCTCTCCCATGCCGCCGAGGCCATCCCTGCTAG | 1191 | 46.6 | MAALSKWSSLSLFALAMVFFVTIAVIRKGETSEVRVQNDDMEEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLSECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINKGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 574066 | 577886 | + | CmaCh17G001160.1 | Cma17g00116 | 312011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00116 | 396 | PRINTS | Pollen allergen Amb family signature | 105 | 122 | IPR018082 | - | |
Cma17g00116 | 396 | PRINTS | Pollen allergen Amb family signature | 309 | 328 | IPR018082 | - | |
Cma17g00116 | 396 | PRINTS | Pollen allergen Amb family signature | 229 | 250 | IPR018082 | - | |
Cma17g00116 | 396 | PRINTS | Pollen allergen Amb family signature | 165 | 181 | IPR018082 | - | |
Cma17g00116 | 396 | PRINTS | Pollen allergen Amb family signature | 129 | 154 | IPR018082 | - | |
Cma17g00116 | 396 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Cma17g00116 | 396 | PANTHER | PECTATE LYASE 18-RELATED | 343 | 393 | IPR045032 | GO:0030570 | |
Cma17g00116 | 396 | SUPERFAMILY | Pectin lyase-like | 59 | 390 | IPR011050 | - | |
Cma17g00116 | 396 | Gene3D | - | 82 | 389 | IPR012334 | - | |
Cma17g00116 | 396 | SMART | amb_all | 157 | 359 | IPR002022 | - | |
Cma17g00116 | 396 | PANTHER | PECTATE LYASE 18-RELATED | 37 | 342 | IPR045032 | GO:0030570 | |
Cma17g00116 | 396 | Pfam | Pectate lyase | 169 | 334 | IPR002022 | - | |
Cma17g00116 | 396 | PANTHER | PECTATE LYASE | 37 | 342 | - | - | |
Cma17g00116 | 396 | PANTHER | PECTATE LYASE | 343 | 393 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma14g01872 | Cma17g00116 | CCT | |
Cma06g01265 | Cma17g00116 | CCT | |
Cma14g01872 | Cma17g00116 | ECH | |
Cma06g01265 | Cma17g00116 | ECH | |
Cma08g01035 | Cma17g00116 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma17g00116 | Cma-Chr17:574066 | Cma18g00204 | Cma-Chr18:1108778 | 0 | dispersed | |
Cma14g01872 | Cma-Chr14:13264747 | Cma17g00116 | Cma-Chr17:574066 | 0 | wgd | |
Cma17g00116 | Cma-Chr17:574066 | Cma19g00136 | Cma-Chr19:853549 | 0 | wgd | |
Cma17g00116 | Cma-Chr17:574066 | Cma02g01698 | Cma-Chr2:9553186 | 0 | wgd | |
Cma17g00116 | Cma-Chr17:574066 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
Cma17g00116 | Cma-Chr17:574066 | Cma08g01035 | Cma-Chr8:6481057 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00116 | K01728 | - | csv:101217580 | 750.355 |