Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00116 ATGGCGGCACTTAGTAAGTGGTCTTCTCTGTCTCTGTTTGCCCTTGCAATGGTGTTCTTCGTAACAATCGCTGTGATTCGCAAGGGAGAGACGTCTGAAGTTAGGGTGCAGAATGATGATATGGAGGAAGAACTCAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCTTGTGGAACAGGCAATCCTATTGATGACTGCTGGCGTTGTGACTCAAATTGGCACAGAAACCGTAAACGTCTATCAGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGACGGTCGTTTCTATGTCGTTACTGATTCGAGTGACCACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGAGACATGGTAATTCAATTGAAACAAGAACTCATCATGAATAGTTTCAAAACCATTGATGCTCGAGGAGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCCAGCCATATATGGATTGACCACAATTCGCTCTCTAATTGTGCTGATGGACTTATTGATGCCATTATGGGCTCAACCGCTATCACAATCTCCAACAACCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGCAAGGGGCTCATTCAAAGAATGCCAAGGTGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGTAGTGCCAACCCCACCATCAATAAAGGAGATATGTTACTAAACGGTGCATATTTCACCCCATCCGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTAGGCTCCATCACTTCTTCTGCAGGTTCTCTCCCATGCCGCCGAGGCCATCCCTGCTAG 1191 46.6 MAALSKWSSLSLFALAMVFFVTIAVIRKGETSEVRVQNDDMEEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLSECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINKGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 574066 577886 + CmaCh17G001160.1 Cma17g00116 312011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00116 396 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cma17g00116 396 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cma17g00116 396 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cma17g00116 396 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cma17g00116 396 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cma17g00116 396 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cma17g00116 396 PANTHER PECTATE LYASE 18-RELATED 343 393 IPR045032 GO:0030570
Cma17g00116 396 SUPERFAMILY Pectin lyase-like 59 390 IPR011050 -
Cma17g00116 396 Gene3D - 82 389 IPR012334 -
Cma17g00116 396 SMART amb_all 157 359 IPR002022 -
Cma17g00116 396 PANTHER PECTATE LYASE 18-RELATED 37 342 IPR045032 GO:0030570
Cma17g00116 396 Pfam Pectate lyase 169 334 IPR002022 -
Cma17g00116 396 PANTHER PECTATE LYASE 37 342 - -
Cma17g00116 396 PANTHER PECTATE LYASE 343 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01872 Cma17g00116 CCT
Cma06g01265 Cma17g00116 CCT
Cma14g01872 Cma17g00116 ECH
Cma06g01265 Cma17g00116 ECH
Cma08g01035 Cma17g00116 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00116 Cma-Chr17:574066 Cma18g00204 Cma-Chr18:1108778 0 dispersed
Cma14g01872 Cma-Chr14:13264747 Cma17g00116 Cma-Chr17:574066 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma19g00136 Cma-Chr19:853549 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma02g01698 Cma-Chr2:9553186 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma06g01265 Cma-Chr6:8417871 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma08g01035 Cma-Chr8:6481057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00116 K01728 - csv:101217580 750.355