Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00125 ATGGCTTCGGCTCAGGTTTTGCCCAATTCGATGGCCTCGACTCGTAAATTAGAGCATTTGGAAGCAGGGAAGCGACGGTTAGAGGAGTTCAGAAAGAAAAAGGCAGCAGAGCGAGTTAAGAAAGCTGCACCACCAATCCAAAATCACATTTCAGATGGTGGTTCCCAGGAGAAGAAGCCTTTAGAATCTGAACATGCTCAACGAATTACAGATTCTGATGGAGCTACGACAACAAACGGAACAGGCAGATCTGCTGTTGAATCATCTTCTGCTCTAGTCAAAGATGTCAGACATGCAGATAACTTTTCTCAGAATATTGATCAAAATGTTTTGAATGAAAGTCGTGCACGCTATCCATCTACAAGAAATATTGATGGAGGTTTCTCTGCTTATCCAGTGAAGCAACCATCAAACAGTCAAGAAATTAAGACACTCAAAAGTTCGAGACTCGCTGGAACCACAGATGATTATAGTAGAAATGAAATATCAGAAATAAATAACGACTCTGGAGTAATCAGTGGATCCCAGGATAGAACTCCATTAGGGAGCGCATTTGGCATAAACCCACAAGCTAATGAAGGGATCGATAGCATTTCTAGTCAATCTGCACACCATGGGGTGGATGGACTACTCTACAGAAGAGGTAGTCGAGAGAATTCTATAATTAAGAGCTCTGGCTCTTTGCATAAATTTTCTGCAAATACTTCTCCACAGAACACTGCTGGCAATTTACAAGATACAGATTCCAGTAGTAACAATATTTTGGCTAGTGAACATTCTTTCTCGTCATATTATGATGGCCTCTTTAATAGTACAACTAGAAAAGGATATAGATCCCATGAAGTTGGGGAAAATGTGAACAAAAATTTTGAATTAATTGACAATCAGACGTCTGTTCTTGAGCAACGAAAGCCCATTGATGTGCCTGATTTAACTAGAATCAAGCCTGCATATGTGCAGTCCTCTGAATCTGCTGGCTTGAATACTGATATTAGAGGCCCCTCCAACTATGAACAACCGTACACTGCGTCATCTGAAAACAGTTTTAGGAGATCTCGCCCATCGTTTCTTGATTCTATTACTGTACCCAAGGTTCCATCAGGGAGTTTTCTTGGACATGGCGAACATGATAAGGGATCTAGAATATCTGATGGGTTTAGAACAGATGAATCTGATGGCTCAGACTCATTAAATCTTCAGAAGCCACTAATGGATATGAAAAAAGTGGGAACATCCTCAGATTTTGCCTCTCAAAACACTCCAGTGCCATATAGCAATTCATTTCCTCCTTCAGTTTTTCCTGTTAAGGGGGTGAACCAGCCAATTATAGGAATAGAGGATAATACTATGGAGAGGAAACACGAGCTCTTTTCATCCAAACAAAATGAAGATTTTGCTGCTCTGGAACAGCATATTGAAGATTTGACACAAGAGAAATTCTCATTACAAAGAGCTTTGGAGGCTTCAAGGGCTTTAGCAGAGTCCTTAGCTGCTGAAAATTCATCTCTTACTGATAGTTATAATAACCAGAGAAGCGTTGTCAACCAACTAAAATCAGATATGGAGATGTTACAGGAGGAAATGAAGACCCAGATGGTTGAACTGGAGTCTATCAAACTTGAGTATGCAAATGCACAACTGGAGTGTAATGCAGCTGATGAACGAGCCAAGCTGATAGCTTCTGAAGTAATTGGTCTTGAAGAGAAGGCCTTAAGATTAAGATCTAATGAGTTAAAGCTGGAGAGGCAATTGGAGAACTTAGAAGCTGAAATCTCTTCGTACAAGAAGAAAATATCTAGCATGGAGAGAGAACGTCATGATTTTCAATCAACTATTGATGCTCTTCAGGAAGAGAAGAAGTTGTTGCAGTCTAAGTTACGCAAAGCTTCTGCAAGTGAAAAGTCCATTGATATTAGCAATCCTAAAAATAAGAAAGATGTCGCTACATCTACGGAAGATTTAGTAAATACAGATACTGCTCCAAGTACTTCTAAACATGAAGTAAAAGATGGAGAATCTCTTACTAAAGATGATACTTCTGGAACTCTTATGCCGCTGGAAAATGCCACTGCTGAAGTTTCAGCGGTCAATATTCCTCCAGATCATATGAGGATGATTCAAAACATCAATGCTCTAATAGCTGAGTTAGCTGTAGAGAAAGATGAGTTAACACAAGCTTTGGCATCCGAGTTGGCTAGCAGTTCTAAGTTGAGGGAGTTGAACAAAGAATTGTCTAGGAAACTGGAAACACAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCTGGTGAGATTGTTCCAGTGAGGCAACATGATTCTCGCACCATGCATGATGAAGATATAGAACTTGCAGATGAAGGCGACGAGGTGGTTGAAAGAGTCTTGGGATGGATTATGAAGCTCTTTCCGGGCGGTCCATCACGCCGAAGGACCAGCAAGCTTCTTTAA 2454 40.46 MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPIQNHISDGGSQEKKPLESEHAQRITDSDGATTTNGTGRSAVESSSALVKDVRHADNFSQNIDQNVLNESRARYPSTRNIDGGFSAYPVKQPSNSQEIKTLKSSRLAGTTDDYSRNEISEINNDSGVISGSQDRTPLGSAFGINPQANEGIDSISSQSAHHGVDGLLYRRGSRENSIIKSSGSLHKFSANTSPQNTAGNLQDTDSSSNNILASEHSFSSYYDGLFNSTTRKGYRSHEVGENVNKNFELIDNQTSVLEQRKPIDVPDLTRIKPAYVQSSESAGLNTDIRGPSNYEQPYTASSENSFRRSRPSFLDSITVPKVPSGSFLGHGEHDKGSRISDGFRTDESDGSDSLNLQKPLMDMKKVGTSSDFASQNTPVPYSNSFPPSVFPVKGVNQPIIGIEDNTMERKHELFSSKQNEDFAALEQHIEDLTQEKFSLQRALEASRALAESLAAENSSLTDSYNNQRSVVNQLKSDMEMLQEEMKTQMVELESIKLEYANAQLECNAADERAKLIASEVIGLEEKALRLRSNELKLERQLENLEAEISSYKKKISSMERERHDFQSTIDALQEEKKLLQSKLRKASASEKSIDISNPKNKKDVATSTEDLVNTDTAPSTSKHEVKDGESLTKDDTSGTLMPLENATAEVSAVNIPPDHMRMIQNINALIAELAVEKDELTQALASELASSSKLRELNKELSRKLETQTQRLELLTAQSMAGEIVPVRQHDSRTMHDEDIELADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 636424 646839 - CmaCh17G001250.1 Cma17g00125 312020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00125 817 MobiDBLite consensus disorder prediction 1 20 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 321 352 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 32 92 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 632 651 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 113 140 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 70 88 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 367 399 - -
Cma17g00125 817 Coils Coil 734 761 - -
Cma17g00125 817 Coils Coil 570 632 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 632 682 - -
Cma17g00125 817 Coils Coil 507 555 - -
Cma17g00125 817 PANTHER PROTEIN BLISTER 1 817 IPR044194 GO:0040008
Cma17g00125 817 MobiDBLite consensus disorder prediction 374 391 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 55 69 - -
Cma17g00125 817 MobiDBLite consensus disorder prediction 228 249 - -
Cma17g00125 817 Coils Coil 706 726 - -
Cma17g00125 817 Coils Coil 458 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00125 - - - bhj:120092754 1212.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01048 Cma17g00125 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00125 Cma-Chr17:636424 Cma08g01048 Cma-Chr8:6553033 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g814 . . . . Bpe04g01051 . Bma04g01032 . Cmo08g01019 Cmo17g00127 . . . . . . . . . . . . . . . . . . . . . Cone14ag0199 Cone15ag0212 . . . Csa02g01012 Chy05g00276 . . . . . . . . . Sed09g0207 . . Cma08g01048 Cma17g00125 Car08g00923 Car17g00111 Cpe12g00109 . Bhi12g01537 Tan06g2351 Cmetu05g1285 . . . Lcy13g0426 . . . . . . . Lsi09g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004173 0 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 3 1 1 5 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00125 Cma_Chr17 FPKM 15.643514 16.896975 20.988121 22.13529 15.077981 13.526183 16.286722 32.994461 32.741817 36.491524