Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00138 ATGGGTTCTTACTCCAAACCCTTCTTGTTCTTCTTGTTCTTCCTTGTATTCCTTGTTTATGTTGCTTGTTTGGTTGAATCTGGTTCTGATTACACCACTTTGGTCTACAAGGGCTGCGCCAAACAAGGATTCTCAGATCCAAATGGCGTTTATTCACAAGCCCTTGCTGCTCTGTTTGGCTCTTTAGTTTCACAATCTGCCAAAGGTTCAAAGTTTTACAAAACCACTTCCGGCACTGCCGGAACTGCCATCACTGGCCTCTTCCAGTGTCGAGGGGACCTCAGGAACTCCGATTGCTATAACTGTGTAAGTAAGCTCCCGGAATTGGCTGATAGTCTGTGCGGCAGAACCATTGCCGCTAGAGTTCAGCTGTCGGGCTGCTATTTGGTGTATGAGTTTCCTGGGTTTGCTCAGATTTCAGGGTTTGAAATGCTGTATAAAACTTGTGGGGCTACGAACATTGCTGGAAGTGGGTTTGAGGAGAGGAGGGACACGGGTTTGTCGGTGTTGGAGAATGGCGTGGTGAGTGGCCATGGGTTTTACACTACTAACTATCAATCTCTGTATGTGTTGGCGCAATGTGAGGGAGATTTGGGGGATTCGGATTGTGGTGAGTGTGTGAAGCATGCTGTCCAGAGAGCTCAGGTTGAATGTGGGAGTTCAATTTCAGGGCAAGTTTATTTGTATAGGTGCTTCATCAGCTACAGTTACTACCCAAATGGGGTTCCTACGAGATCGTCCACTCCCTCGTCTTCTTCTTCTTCATCATATTCTTCATCTCCATCAGGGATGGGGCAAAACACAGGGAAGACAGTGGCAGTGATATTAGGAGGGGCAGCAGGAGTGGGATTTGTGGTCATGTTCTTGCTTTTCATCAGAGGTTTGAAGAAGAAACATGATGATTATTGA 909 46.64 MGSYSKPFLFFLFFLVFLVYVACLVESGSDYTTLVYKGCAKQGFSDPNGVYSQALAALFGSLVSQSAKGSKFYKTTSGTAGTAITGLFQCRGDLRNSDCYNCVSKLPELADSLCGRTIAARVQLSGCYLVYEFPGFAQISGFEMLYKTCGATNIAGSGFEERRDTGLSVLENGVVSGHGFYTTNYQSLYVLAQCEGDLGDSDCGECVKHAVQRAQVECGSSISGQVYLYRCFISYSYYPNGVPTRSSTPSSSSSSSYSSSPSGMGQNTGKTVAVILGGAAGVGFVVMFLLFIRGLKKKHDDY 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 700115 702190 - CmaCh17G001380.1 Cma17g00138 312033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00138 302 PANTHER PLASMODESMATA-LOCATED PROTEIN 2 7 301 - -
Cma17g00138 302 Pfam Salt stress response/antifungal 43 132 IPR002902 -
Cma17g00138 302 Pfam Salt stress response/antifungal 153 237 IPR002902 -
Cma17g00138 302 MobiDBLite consensus disorder prediction 246 265 - -
Cma17g00138 302 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 7 301 - -
Cma17g00138 302 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Cma17g00138 302 Gene3D - 142 239 IPR038408 -
Cma17g00138 302 Gene3D - 31 136 IPR038408 -
Cma17g00138 302 ProSiteProfiles Gnk2-homologous domain profile. 141 240 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00138 - - - csv:101214821 520.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01296 Cma17g00138 CCT
Cma14g01843 Cma17g00138 CCT
Cma06g01296 Cma17g00138 ECH
Cma14g01843 Cma17g00138 ECH
Cma08g01059 Cma17g00138 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00973 Cma-Chr12:7647266 Cma17g00138 Cma-Chr17:700115 6.17E-43 dispersed
Cma17g00138 Cma-Chr17:700115 Cma15g00736 Cma-Chr15:3583452 5.47E-32 dispersed
Cma14g01843 Cma-Chr14:13136511 Cma17g00138 Cma-Chr17:700115 3.30E-150 wgd
Cma17g00138 Cma-Chr17:700115 Cma02g01720 Cma-Chr2:9685729 5.97E-96 wgd
Cma17g00138 Cma-Chr17:700115 Cma06g01296 Cma-Chr6:8598574 1.76E-147 wgd
Cma17g00138 Cma-Chr17:700115 Cma08g01059 Cma-Chr8:6630418 1.05E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g780 . . . . . Bpe14g01278 . . Cmo08g01029 Cmo17g00138 Cma06g01296 Cma14g01843 Car06g01112 Car14g01651 Sed02g1437 Cpe08g00357 Cpe03g01543 Bhi01g00678 Tan10g0631 Cmetu06g1629 . Hepe05g1691 . Lcy11g1704 Cla06g00698 Cam06g0749 Cec06g0755 Cco06g0767 Clacu06g0740 Cmu06g0723 Cre06g1499 Cone14ag0180 Cone15ag0190 Cone7ag0347 Cone4ag0361 Lsi05g01768 Csa02g01027 Chy05g00291 Cme06g00453 Blo02g00771 Blo07g00287 Bda11g00648 Bda13g00040 . . Bma02g00752 . Sed04g2018 Cmo06g01304 Cmo14g01886 Cma08g01059 Cma17g00138 Car08g00935 Car17g00121 . Cpe17g00217 Bhi12g01560 Tan06g2369 Cmetu05g0653 Lac12g2119 Hepe03g0314 . Lcy13g0410 Cla05g00411 Cam05g0449 Cec05g0456 Cco05g0457 Clacu05g0446 Cmu05g0423 Cre05g0486 Lsi09g01195 Csa03g01172 Chy06g00434 Cme05g00619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001670 2 2 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00138 Cma_Chr17 FPKM 6.301521 8.011877 0.674682 0.662952 19.995232 18.526073 22.093719 0.313526 0.353917 0.573726