Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00145 ATGGCCGGTGACGTAGCGGTGGAGAGTCCTGCGGCGGCGGCAATGGCGGCGGCGACAGAAGTAGGCGATTCCATTGAGCAGTCCCATATGTTGGAGAGAAAATGGACCTTTTGGTTCGATAACCAGTCGAGGCCGAAGCAAGGTGCTGAATGGGGCAGCTCTCTGCGCAAGGTCTATACCTTCGACAGTGTCGAAGAATTTTGGTGTTTTTACGATCAGATATTGAAGCCGAGCAAGTTGCCGGCTAATGCAGATTTTCACTTGTTCAAAGCTAGAGTTGAACCGAAATGGGAAGATCCTGAGTGTGCTAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGACTAACCTCGATACCATGTGGCTGGAAACGTTGATGGCATTGATTGGGGAACAATTTGAGGAGTCTGATGTGATCTGTGGCGTAGTTGCCAGTCTGCGCCAGAGGCAGGACAAGCTTGCACTGTGGACCAAGACAGCAACAAATGAGGCTGTTCAGATGAGCATCGGTAGGAAATGGAAGGAGATTATCGACGTTACCGACAAGATTTCCTTCAGCTTTCATGAGGATCTGAGAAGGGAAAAGTTGGCGAAGTCGTCTCGGTACAAGAGAAGGTTATGGGAGAGTGTAATTTTGAAAAATGAAGCATTTCCTGCGAGTACTAAAAGAGTGAGTGTTTTGAGTATAGATGATATTACAGCTGATGAACTGAATGGAATAGAAAACAGGAGAAGGGCATAA 744 47.31 MAGDVAVESPAAAAMAAATEVGDSIEQSHMLERKWTFWFDNQSRPKQGAEWGSSLRKVYTFDSVEEFWCFYDQILKPSKLPANADFHLFKARVEPKWEDPECANGGKWTVTSSRKTNLDTMWLETLMALIGEQFEESDVICGVVASLRQRQDKLALWTKTATNEAVQMSIGRKWKEIIDVTDKISFSFHEDLRREKLAKSSRYKRRLWESVILKNEAFPASTKRVSVLSIDDITADELNGIENRRRA 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 719790 721514 + CmaCh17G001450.1 Cma17g00145 312040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00145 247 Pfam Eukaryotic initiation factor 4E 31 186 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cma17g00145 247 PANTHER BNAA08G29940D PROTEIN 7 197 - -
Cma17g00145 247 SUPERFAMILY eIF4e-like 25 192 IPR023398 -
Cma17g00145 247 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 7 197 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cma17g00145 247 ProSitePatterns Eukaryotic initiation factor 4E signature. 85 108 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Cma17g00145 247 Gene3D RNA Cap, Translation Initiation Factor Eif4e 20 205 IPR023398 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01063 Cma17g00145 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00570 Cma-Chr13:5756713 Cma17g00145 Cma-Chr17:719790 1.60E-67 dispersed
Cma14g01112 Cma-Chr14:8228464 Cma17g00145 Cma-Chr17:719790 1.37E-27 dispersed
Cma17g00145 Cma-Chr17:719790 Cma18g00446 Cma-Chr18:2462683 2.19E-70 dispersed
Cma17g00145 Cma-Chr17:719790 Cma08g01063 Cma-Chr8:6648359 2.64E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00145 K03259 - csv:101208495 349.362