Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00145 | ATGGCCGGTGACGTAGCGGTGGAGAGTCCTGCGGCGGCGGCAATGGCGGCGGCGACAGAAGTAGGCGATTCCATTGAGCAGTCCCATATGTTGGAGAGAAAATGGACCTTTTGGTTCGATAACCAGTCGAGGCCGAAGCAAGGTGCTGAATGGGGCAGCTCTCTGCGCAAGGTCTATACCTTCGACAGTGTCGAAGAATTTTGGTGTTTTTACGATCAGATATTGAAGCCGAGCAAGTTGCCGGCTAATGCAGATTTTCACTTGTTCAAAGCTAGAGTTGAACCGAAATGGGAAGATCCTGAGTGTGCTAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGACTAACCTCGATACCATGTGGCTGGAAACGTTGATGGCATTGATTGGGGAACAATTTGAGGAGTCTGATGTGATCTGTGGCGTAGTTGCCAGTCTGCGCCAGAGGCAGGACAAGCTTGCACTGTGGACCAAGACAGCAACAAATGAGGCTGTTCAGATGAGCATCGGTAGGAAATGGAAGGAGATTATCGACGTTACCGACAAGATTTCCTTCAGCTTTCATGAGGATCTGAGAAGGGAAAAGTTGGCGAAGTCGTCTCGGTACAAGAGAAGGTTATGGGAGAGTGTAATTTTGAAAAATGAAGCATTTCCTGCGAGTACTAAAAGAGTGAGTGTTTTGAGTATAGATGATATTACAGCTGATGAACTGAATGGAATAGAAAACAGGAGAAGGGCATAA | 744 | 47.31 | MAGDVAVESPAAAAMAAATEVGDSIEQSHMLERKWTFWFDNQSRPKQGAEWGSSLRKVYTFDSVEEFWCFYDQILKPSKLPANADFHLFKARVEPKWEDPECANGGKWTVTSSRKTNLDTMWLETLMALIGEQFEESDVICGVVASLRQRQDKLALWTKTATNEAVQMSIGRKWKEIIDVTDKISFSFHEDLRREKLAKSSRYKRRLWESVILKNEAFPASTKRVSVLSIDDITADELNGIENRRRA | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 719790 | 721514 | + | CmaCh17G001450.1 | Cma17g00145 | 312040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00145 | 247 | Pfam | Eukaryotic initiation factor 4E | 31 | 186 | IPR001040 | GO:0003723|GO:0003743|GO:0006413 | |
Cma17g00145 | 247 | PANTHER | BNAA08G29940D PROTEIN | 7 | 197 | - | - | |
Cma17g00145 | 247 | SUPERFAMILY | eIF4e-like | 25 | 192 | IPR023398 | - | |
Cma17g00145 | 247 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 7 | 197 | IPR001040 | GO:0003723|GO:0003743|GO:0006413 | |
Cma17g00145 | 247 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 85 | 108 | IPR019770 | GO:0003723|GO:0003743|GO:0005737|GO:0006413 | |
Cma17g00145 | 247 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 20 | 205 | IPR023398 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g01063 | Cma17g00145 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g00570 | Cma-Chr13:5756713 | Cma17g00145 | Cma-Chr17:719790 | 1.60E-67 | dispersed | |
Cma14g01112 | Cma-Chr14:8228464 | Cma17g00145 | Cma-Chr17:719790 | 1.37E-27 | dispersed | |
Cma17g00145 | Cma-Chr17:719790 | Cma18g00446 | Cma-Chr18:2462683 | 2.19E-70 | dispersed | |
Cma17g00145 | Cma-Chr17:719790 | Cma08g01063 | Cma-Chr8:6648359 | 2.64E-122 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00145 | K03259 | - | csv:101208495 | 349.362 |