Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00154 ATGGGTCTTGAACATTTCCGTCTCAAACTCAAGGCGCTTAGATTGGGAAGGTTTCTGACGAGGAATAGAAGGAGTAAAAGACGGCCGGCGGCGGCGGTGTGTAATCGGACGTGGATGGCGCCGGTGAACCATGGGTATCATATGGTGGCCGATCTGTCGTATTCGAGGAATTGGGAAGAGGAATCGGAGCACGACTCTGTTGTGGTGCAGAGAGAGCAGATGGATGGGATTGAATTATGGTTTTTTGGGGTTTTTGATACTCAAATTGGCGACGAAGTCATCAAGTTCATGCAAACCCATTTCTTTGATAAGAACTTCAAACAGTCTCAAGTAAAGAGGAAGGGAAGAGAAGCAATGAAGAAAGCACATGTGAGTGTAAGAAGTAAGGTGAAAGAAGCAAAGGAAGGGAAGGAGGCATGGAAAATGGGATCATCTTCAGCATTGGTCATGGATGGAGATAGATTGGTGATTGCTACCATGGGGGACTACAGAGCCATTGTATGTGAAAATGGTCTGGCTCGTCAAATAAGCTGTGATCAAGATCCAACTAAGCAACGTTGGCACCGTAGATTAATGCTCGGAATGAAACCTTGGAGAAGCTCCGAACTTGTGGTTGCAGCTAAAAGAATCAACTCGGAAACGGAATTCGTGATATTGGGAAGCAATGGCATATGGGAGGTAATGAAGAACCAGGAGGCTGTGAATCTGATAAGACACATAGAAGACCCACAAGAAGCAGCAGAGTGTTTGGCGAAGGAGGCCTTCACCAGAATGAGCAAAACCAGCATTTCTTGTTTGGTCATTCGTTTCGACTAA 816 45.83 MGLEHFRLKLKALRLGRFLTRNRRSKRRPAAAVCNRTWMAPVNHGYHMVADLSYSRNWEEESEHDSVVVQREQMDGIELWFFGVFDTQIGDEVIKFMQTHFFDKNFKQSQVKRKGREAMKKAHVSVRSKVKEAKEGKEAWKMGSSSALVMDGDRLVIATMGDYRAIVCENGLARQISCDQDPTKQRWHRRLMLGMKPWRSSELVVAAKRINSETEFVILGSNGIWEVMKNQEAVNLIRHIEDPQEAAECLAKEAFTRMSKTSISCLVIRFD 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 777326 780214 + CmaCh17G001540.1 Cma17g00154 312049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00154 271 ProSiteProfiles PPM-type phosphatase domain profile. 49 270 IPR001932 -
Cma17g00154 271 SUPERFAMILY PP2C-like 45 271 IPR036457 -
Cma17g00154 271 Pfam Protein phosphatase 2C 75 190 IPR001932 -
Cma17g00154 271 Pfam Protein phosphatase 2C 207 261 IPR001932 -
Cma17g00154 271 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 44-RELATED 6 270 - -
Cma17g00154 271 Gene3D - 51 271 IPR036457 -
Cma17g00154 271 CDD PP2Cc 81 270 IPR001932 -
Cma17g00154 271 PANTHER ALPHABET, ISOFORM E-RELATED 6 270 - -
Cma17g00154 271 SMART PP2C_4 41 268 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00154 K19704 PTC1; protein phosphatase PTC1 [EC:3.1.3.16] - csv:101212891 443.351
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01076 Cma17g00154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00154 Cma-Chr17:777326 Cma11g01913 Cma-Chr11:12647339 7.24E-42 dispersed
Cma17g00154 Cma-Chr17:777326 Cma08g01076 Cma-Chr8:6703586 1.48E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g728 . . . . . . . . Cmo08g01051 Cmo17g00153 . . . . . . . . . . . . . . Cla06g00676 Cam06g0726 Cec06g0733 Cco06g0742 Clacu06g0717 Cmu06g0702 Cre06g1473 . Cone15ag0169 . . . Csa02g01050 . . . . . . . . . . Sed09g0664 . . Cma08g01076 Cma17g00154 Car08g00949 Car17g00137 Cpe12g00132 Cpe17g00201 Bhi12g01602 Tan06g2397 Cmetu05g0571 . . . Lcy13g0387 . . . . . . . Lsi09g01223 . . Cme05g00581
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008624 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00154 Cma_Chr17 FPKM 0.649521 0.0 0.277033 0.0 3.414648 2.519063 4.28849 0.348871 0.450142 0.366793