Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00158 ATGGAAGCTACTAGGCGTTGGTTTAATAAGTTCAGATCCAAAGACAAGCCAAAATCCTCAACAAATAAGGAGAGTGCAGGAAATGCTAGAGATGCATCGAAAGCACCAACCAGTGAAGAGTTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTATATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAACGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAACAGAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACGGAGTATATGCGCCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTAACAATGATAGGGAGGGGTGCTTTCGGAGAGGTTAGAGTTTGTCGTGAGAAAGCAACAGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCTGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTGTATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTACTTATGAGGAAAGATACTCTAACAGAAGACGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCAGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCATTAGACTGTAGTAACCTGCAAGAAAAGGATTTTTCCCAGGGAAATAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGACCTGTGGCATCAAAACGCACACAACAGGAACAACTACAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTAGTGGGATTTCCACCGTTCTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCCGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAATGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAACGATGAATTGGATACTCAAAACTTCGAGAAGTTCGAAGAGACTGAAAATGCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGATGTTATCATCGAAGGACGTCAATTTTGTGGGTTATACGTACAAAAACTTGGAAATCATTGATGATAATCAGTTGCCTGGAATAGCTGAATTGAAGAAGAAGAGCGCAAAATCTACAAGACCTTCCATCAAATCTCTTTTTGTATTCCTCCGTCGAACTCGAATTCCCTCTCTTCTTCCACATGCAGCTCCGTCACTGTCTTCCATCGGCGATTCTTCCGGTTTCGGAGCTTCTGAGTCAGCTAAATCCGTGGTGGTTTGGTTCCATGTGTTGTTGATCACCAGTTTTTGTTGCGTCGTTTGCTTTTGGAGATCTTACTTTAAAGTGTTTCGCAGTGGAGTGAGAGTCGAGTGTGGAGTTCATGAAGAGTGGGGATTAGCTGACTTGGAGTTCCCGCTGGACCTGGAGATGTTGCAGCTCCCTGAGGTATCTTATTTTGCTCTGAAATCCAATCCTTATGTCGTTGAGGCGCTGTTTTCGCAGTGGCTTTCGCTTCCCGGGACTGGCCGACTGGTGAATTCTTTGATTACTGATGCGAAGTCCGGTGCTTCTTTGAATGTTGGCGGGAACTCTACTGGAATCGATGGTGTTTCTAATCATTCTCTACCTTCCATGTTTCCTGGTGGCAGTACACCTCCACTTTCACCACGCAGTGCATCCAGTTCCCCACGGATGGTGAAACAGAGGTTTGGACCTTCTTCGTTAGGCTCTCCACTTAAGTTGGTCTGTGAGCCAGCAAGAGAGGCTATACCACAGTTTTATTTTACAACTGGTCGTCCAGCACCGAATGCCACGACAGAAGATTTTCTATATAAAGTGAATCAAATTTTTCTGTCTCGTTCGGATGGAGTGCAAATAAAGGAGTTTAAATCAGTCACGAAGGAGATCTGCAAGTTACCTTCATATCTCTCCACTACTCTTTTTAGGAAGATTGACGCTAACTGCAGCGGAAAAGTATCGAGAGAGCAGTTCATTAATTATTGGGTTACGAGCAATATGTTAACTATGGATTTAGCAACTCAAGTATTTACTATTCTCAAGGAGCCAGAGCGAAATTACCTTGTTCAGGATGATTTCAAACCTGCCTTACAAGAACTTTTGGCAACTCATCCGGGGTTGGAATTTTTGCAAAGTACACCAGAATTCCAGGAAAGATATGCTGAAACAGTCATATACAGGATATTTTACTATATTAACAGATCCAGTAACGGTCGTATTACCCTCAGGGAGTTGAAGCGTGGCAACTTAATTGCTGCAATGCAGCATGTGGACAAGGAAGAAGATATCAACAAAGTCCTGAAGTACTTCTCATACGAACACTTCTATGTCATATATTGCAAATTTTGGGAGCTTGACAATGATCATGATTTTTTTATCGAGAAAGAGAATGTTATCAAATATGGTAACCATGCTTTAACATATCGGATTGTCGATAGAATCTTTTCTCAGGTTCCAAGAAAATTTACTTGTAACGTTGAAGGGAGGATGGGGTATGAAGACTTTGTGTTCTTCATTTTGGCTGAAGAGGATAAATCATCTGAACCTAGTCTTGAGTACTGGTTCAAATGCATTGATCTAGACGGAAATGGAGTGCTCACAAGGAAAGAAATGCACTATTTTTTTGAAGAGCAGTTGCACCGAATGGAGTGTATGGCTCAGGAACCAGTGCTTTTTGAGGACATATTGTGCCAGATTTTTGATATGATCGGACCAGAGAATGAGGAATGCATAACATTGCGAGATATTAAAAACTGCAAACTTGCTGGACATGTTTTCAACATCCTTTTCAATCTCAACAAGTTCGTTGCTTTTGAAAGTCGTGATCCATTCCTAATCCGTCAGGAACATGAGGATCCAACTTTAACGGAATGGGATCGATTTGCTCATAGAGAATATATTCGTCTTTCCATGGAAGAAGAAGCTGAAGATGCTTCAAATGCAAGTGATGCCTGGGATGAGTCACTTGAGGCTCCTTTTTGA 3381 41.61 MEATRRWFNKFRSKDKPKSSTNKESAGNARDASKAPTSEELPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDVNFVGYTYKNLEIIDDNQLPGIAELKKKSAKSTRPSIKSLFVFLRRTRIPSLLPHAAPSLSSIGDSSGFGASESAKSVVVWFHVLLITSFCCVVCFWRSYFKVFRSGVRVECGVHEEWGLADLEFPLDLEMLQLPEVSYFALKSNPYVVEALFSQWLSLPGTGRLVNSLITDAKSGASLNVGGNSTGIDGVSNHSLPSMFPGGSTPPLSPRSASSSPRMVKQRFGPSSLGSPLKLVCEPAREAIPQFYFTTGRPAPNATTEDFLYKVNQIFLSRSDGVQIKEFKSVTKEICKLPSYLSTTLFRKIDANCSGKVSREQFINYWVTSNMLTMDLATQVFTILKEPERNYLVQDDFKPALQELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSSNGRITLRELKRGNLIAAMQHVDKEEDINKVLKYFSYEHFYVIYCKFWELDNDHDFFIEKENVIKYGNHALTYRIVDRIFSQVPRKFTCNVEGRMGYEDFVFFILAEEDKSSEPSLEYWFKCIDLDGNGVLTRKEMHYFFEEQLHRMECMAQEPVLFEDILCQIFDMIGPENEECITLRDIKNCKLAGHVFNILFNLNKFVAFESRDPFLIRQEHEDPTLTEWDRFAHREYIRLSMEEEAEDASNASDAWDESLEAPF 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 800797 813310 - CmaCh17G001580.1 Cma17g00158 312053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00158 1126 MobiDBLite consensus disorder prediction 1 47 - -
Cma17g00158 1126 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cma17g00158 1126 ProSiteProfiles EF-hand calcium-binding domain profile. 979 1014 IPR002048 GO:0005509
Cma17g00158 1126 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma17g00158 1126 SUPERFAMILY Protein kinase-like (PK-like) 94 470 IPR011009 -
Cma17g00158 1126 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 521 - -
Cma17g00158 1126 MobiDBLite consensus disorder prediction 22 47 - -
Cma17g00158 1126 Gene3D - 713 814 - -
Cma17g00158 1126 Gene3D Phosphorylase Kinase; domain 1 117 447 - -
Cma17g00158 1126 Gene3D Transferase(Phosphotransferase) domain 1 203 436 - -
Cma17g00158 1126 SUPERFAMILY EF-hand 738 880 IPR011992 -
Cma17g00158 1126 MobiDBLite consensus disorder prediction 1107 1126 - -
Cma17g00158 1126 ProSitePatterns EF-hand calcium-binding domain. 992 1004 IPR018247 -
Cma17g00158 1126 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 40 521 - -
Cma17g00158 1126 SUPERFAMILY EF-hand 895 1054 IPR011992 -
Cma17g00158 1126 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00158 1126 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00158 1126 MobiDBLite consensus disorder prediction 1 21 - -
Cma17g00158 1126 Gene3D - 815 902 - -
Cma17g00158 1126 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cma17g00158 1126 Coils Coil 68 102 - -
Cma17g00158 1126 CDD STKc_NDR_like 117 482 - -
Cma17g00158 1126 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00158 1126 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma17g00158 1126 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma17g00158 1126 MobiDBLite consensus disorder prediction 668 694 - -
Cma17g00158 1126 Pfam EF-hand domain 804 893 IPR041534 -
Cma17g00158 1126 Pfam EF-hand domain pair 908 1008 IPR002048 GO:0005509
Cma17g00158 1126 Pfam EF-hand domain pair 755 796 IPR002048 GO:0005509
Cma17g00158 1126 Gene3D - 903 1074 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01079 Cma17g00158 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00763 Cma-Chr5:4453456 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma08g00274 Cma-Chr8:1598140 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma10g00738 Cma-Chr10:3347570 Cma17g00158 Cma-Chr17:800797 4.18E-126 dispersed
Cma11g00709 Cma-Chr11:3453691 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma12g00554 Cma-Chr12:2884467 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma12g00962 Cma-Chr12:7556017 Cma17g00158 Cma-Chr17:800797 0 dispersed
Cma17g00158 Cma-Chr17:800797 Cma17g01322 Cma-Chr17:8912799 0 dispersed
Cma06g01479 Cma-Chr6:9404387 Cma17g00158 Cma-Chr17:800797 1.00E-24 transposed
Cma17g00158 Cma-Chr17:800797 Cma08g01079 Cma-Chr8:6729107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69220 PF00069 Pkinase 4.70E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00158 K08790 - csv:101205120 1021.15