Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00160 ATGACGAGGGGAAGATCTGATGGAACACAGAAGAAGCGATTAATCGCTACCATATGTGTTGTGGCGATATTTCTTGGGTTTTTGTATGCATATTATGGATCCATTTTTGGCAGTCAAGACCATGGTGCGTTCGCTCTGCAGCATGGCAGCAAGTCCTTGAGCCATTATTTGATGGGGAACGAAGACTCTGAAGAATCTACAACCTCAACTGAGCAGGATGACGCAGAAGATGGTGTCGTACCAAAAAGTTACCCTGTCTGCGATGACCGGCATTCGGAATTGATTCCATGCTTGGACAGACATCTCATTTACCAAATGAGATTGAAACTGGACCTTTCTTTAATGGAACACTATGAAAGACACTGCCCACCACCTGAGAGACGGTTCAATTGCCTGATTCCTCCTCCAGCAGGATATAAGGTCCCAATTAAGTGGCCAAAGAGCAGAGATGAAGTGTGGAAAGCTAACATTCCTCATACTCATCTTGCACATGAGAAATCCGATCAGAACTGGATGGTTGTGAAAGGAGAAAAAATTGTGTTCCCTGGAGGAGGTACTCACTTTCACTACGGAGCAGATAAGTACATTGCTTCAATTGCAAATATGCTCAACTTTTCAAATGATAATCTAAACAATCAAGGAAGACTGCGTACCGTTCTTGATGTTGGTTGTGGTGTCGCAAGTTTTGGAGGATATCTTCTCTCATCTAATATCATAGCAATGTCCTTAGCACCAAATGATGTTCATCAAAATCAAATTCAATTTGCCTTGGAAAGAGGAATTCCTGCATACCTTGGTGTTTTAGGAACCAAGAGGCTCCCTTACCCAAGTAGATCTTTTGAACTCGCACACTGTTCTCGTTGTCGTATTGATTGGCTTCAAAGAGACGGGATTCTTCTTCTTGAGCTAGATAGATTACTTAGACCGGGAGGTTATTTTGCTTATTCATCTCCAGAAGCTTATGCCCAGGATGAGGAGGATCTGAGAATATGGAGAAAAATGAGTGACCTTGTGGGCCGTATGTGTTGGAGAATTGCTGCAAAGAGGAATCAGACTGTAATATGGCAAAAGCCCCTAACAAATGATTGTTATCTGCAAAGAGAACCTGGTACTCGTCCTCCACTATGTCGATCTGACGATGATCCTGATGCCGTTTGGGGTGTGCAGATGGAAGCTTGTATCACTCCGTACTCTGACCATGATCATAAAGTCAAGGGCAGTGGATTGGCTCCTTGGCCAGCTCGATTAACTTCACCTCCTCCCCGACTTCAGGATTTTGGCTATTCAACTGAAATGTTCGAAAAAGACACGGAAATTTGGCAGCGTAGAGTTGGGAGTTACTGGAATCTACTGAGTCCAAAGATCGAATCGGATACTATCAGGAATGTCATGGACATGAAGGCTAATATGGGGTCGTTTGGAGCTGCTCTGAAGGACAAGGATGTGTGGGTGATGAATGTTGTTCCAGAAGATGGACCGAACACGCTGAAGTTGATATACGATCGAGGCCTCATAGGCTCTATCAATAACTGGTGCGAAGCCTTCTCTACATATCCTCGTACATACGATCTGCTCCATGCATGGACCGTCTTTTCTGATATTGAGAAGAAAGAGTGCAGCATTGAGGACTTGTTGCTCGAGATGGATCGCATACTCAGACCCACAGGTTTTGTCATCATCAGGGACAAGCAATCTGTTGTAGATTTGATAAAGAAGTATCTACCTGCATTACACTGGGAAACAGTAGCTACCGCCAATGCCAGCTCAGATTCAGAATTGGACGGGGACGAGACCGTGTTCATTGTCCAGAAGAAACTGTGGCTGACAAGTGAGAGTGTCAGGGATTCAGAATAA 1854 44.28 MTRGRSDGTQKKRLIATICVVAIFLGFLYAYYGSIFGSQDHGAFALQHGSKSLSHYLMGNEDSEESTTSTEQDDAEDGVVPKSYPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPAGYKVPIKWPKSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIVFPGGGTHFHYGADKYIASIANMLNFSNDNLNNQGRLRTVLDVGCGVASFGGYLLSSNIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWRKMSDLVGRMCWRIAAKRNQTVIWQKPLTNDCYLQREPGTRPPLCRSDDDPDAVWGVQMEACITPYSDHDHKVKGSGLAPWPARLTSPPPRLQDFGYSTEMFEKDTEIWQRRVGSYWNLLSPKIESDTIRNVMDMKANMGSFGAALKDKDVWVMNVVPEDGPNTLKLIYDRGLIGSINNWCEAFSTYPRTYDLLHAWTVFSDIEKKECSIEDLLLEMDRILRPTGFVIIRDKQSVVDLIKKYLPALHWETVATANASSDSELDGDETVFIVQKKLWLTSESVRDSE 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 817601 821142 - CmaCh17G001600.1 Cma17g00160 312055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00160 617 Gene3D Vaccinia Virus protein VP39 208 356 IPR029063 -
Cma17g00160 617 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 93 604 IPR004159 GO:0008168
Cma17g00160 617 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 614 - -
Cma17g00160 617 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 430 577 IPR029063 -
Cma17g00160 617 MobiDBLite consensus disorder prediction 59 80 - -
Cma17g00160 617 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 614 IPR004159 GO:0008168
Cma17g00160 617 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 364 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00160 - - - csv:101204871 1199.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01080 Cma17g00160 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00526 Cma-Chr14:2606356 Cma17g00160 Cma-Chr17:817601 2.45E-165 dispersed
Cma15g00107 Cma-Chr15:488202 Cma17g00160 Cma-Chr17:817601 6.16E-166 dispersed
Cma15g00367 Cma-Chr15:1681009 Cma17g00160 Cma-Chr17:817601 0 dispersed
Cma17g00160 Cma-Chr17:817601 Cma14g02009 Cma-Chr14:14077083 6.67E-153 dispersed
Cma17g00160 Cma-Chr17:817601 Cma08g01080 Cma-Chr8:6739603 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g719 . . . . . Bpe14g01260 . . Cmo08g01055 Cmo17g00158 . . . . . . . . . . . . . . Cla06g00670 Cam06g0719 Cec06g0727 Cco06g0735 Clacu06g0710 Cmu06g0696 Cre06g1467 Cone14ag0151 Cone15ag0164 Cone7ag0327 Cone4ag0331 . Csa02g01057 Chy05g00317 . Blo02g00749 Blo07g00267 . . . Bpe13g00555 Bma02g00776 Bma06g01603 Sed12g1127 . . Cma08g01080 Cma17g00160 Car08g00955 Car17g00141 Cpe12g00137 Cpe17g00197 Bhi12g01613 Tan06g2406 Cmetu05g0199 Lac12g2163 Hepe03g0289 . Lcy13g0380 . . . . . . . Lsi09g01230 . . Cme05g00573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000948 3 5 3 5 4 2 4 2 2 2 2 2 4 2 2 4 2 5 3 2 3 2 2 2 2 2 2 4 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00160 Cma_Chr17 FPKM 70.34951 76.020882 67.242676 69.119469 83.446236 93.880066 83.228172 40.113911 37.005058 37.922405