Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00162 ATGGGGCAGCAACCTTCCAAAGATGAGCTTGTGTACCAACGCGCCAGCAATGGCGATGTGGATGGGATTAAAGCCCTTTCTACCGATGGTGCCGACCTTGAGTGGGTTGATAGGGAAGGAAGGACTCCGTTGATTGTTGCCTGTACGAAACCCGAGCCCTACAACGTGGCGAAAACGTTGCTAGAACTCGGCGCCAATGTCAATGCGTTTGGACCAGGCCGTCATGGTGGAACGCCATTGCACCATGCTGCTAAAAGAGGCTTGGAAAACACTGTTAAATTGCTTCTTTCATACAGAGCAAATACTTCGATAATCAATGATGCTTGCCAAACTCCTTTGGAAGTTGCGAGAGCAGCGGGGCACAAAAATGTTGTTCGTGCCATTGAGAATCATATTTGTTTATTCTCTGGTTGGATGCGGGAATTTTATGGGCCGGAGTTTCTCGAAGTACTTGTTCCTCATCTCCTTTCGAGAAAAGTCTGGGTAGTCATTTTACCTTGTGGTTCTCGAAATCCTATGAAGCCTACTAAGTTGGAGCTTGCCTTATACACTAGCTTGGAGGATGCCCAACCTCGTTTGATCATTCCATTGTGGAAATCATGTTTAGAGGAACATAAGTTGCAGGATCCTGATCCCTCTGTTGTTATTGTTGACAACACATCAAACTTAGTCTCAAGAGGAGTAAGGAGGCGAAAACGGAGTTGTCACACCTCCTGGGAAGCCAGATCTCGATTTCGAAAATCAAAGAGACCTGGACGTCTTAGACTTGCACCTGATAATGAGTATGACAGACAACAACTTCAATGGTTTTGTGATGCTTGCAAAGGGATTCCTCAGCCAAAGGTGATGCAACGTACAATCTGGCATAATCACCAGAGCCCGATCAACATTGCCACTGTACCTCCGGGTTCAGAAGATCCGGAGCTTGCAATGGCCATAAATGCCTCTATTCAGTCAGCTATGCAGGAAAGAGGACAGCTTCAAAATCCCCATTCATCAAGCTCTGAAGCAGGTGCCTCAAGTAGCAGTGCATTACCTCCACCTGCTCCTCCAAGACCAGGCTCTAGCAAATTGACAGTGCATGAAGAGGCAAGTCACGGTCACAATCCAAGCCATTGCTCTCAAGCGCCGATGAACACTGATATCCAGATTACACACCCTCCAAATGCAGTCCCCACAGCTCCACCAGTTGCAGCCAAAACCTTTGAGGCTAGCTCTAGTATGGTCGACGACTACCCGTTGGTCGGTTCGGATTCCACAGATGGCATGGCATCTTCATCTGGTGTTGGGGACGATGGGAAACAAGGCAGTGGCAACTCAACATGTGTAATATGTTTGGATGCACCAGTGGAGGGAGCCTGCGTCCCCTGTGGCCATATGGCTGGATGTATGTCTTGTTTAAGTGAGATCAAAGTCAAGAATTGGGGCTGCCCAGTTTGTCGCACCAAGATCAATCAAGTCATAAAGCTGTATGCTGTCTGA 1482 47.84 MGQQPSKDELVYQRASNGDVDGIKALSTDGADLEWVDREGRTPLIVACTKPEPYNVAKTLLELGANVNAFGPGRHGGTPLHHAAKRGLENTVKLLLSYRANTSIINDACQTPLEVARAAGHKNVVRAIENHICLFSGWMREFYGPEFLEVLVPHLLSRKVWVVILPCGSRNPMKPTKLELALYTSLEDAQPRLIIPLWKSCLEEHKLQDPDPSVVIVDNTSNLVSRGVRRRKRSCHTSWEARSRFRKSKRPGRLRLAPDNEYDRQQLQWFCDACKGIPQPKVMQRTIWHNHQSPINIATVPPGSEDPELAMAINASIQSAMQERGQLQNPHSSSSEAGASSSSALPPPAPPRPGSSKLTVHEEASHGHNPSHCSQAPMNTDIQITHPPNAVPTAPPVAAKTFEASSSMVDDYPLVGSDSTDGMASSSGVGDDGKQGSGNSTCVICLDAPVEGACVPCGHMAGCMSCLSEIKVKNWGCPVCRTKINQVIKLYAV 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 827734 832798 + CmaCh17G001620.1 Cma17g00162 312057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00162 493 MobiDBLite consensus disorder prediction 369 387 - -
Cma17g00162 493 Pfam Zinc finger, C3HC4 type (RING finger) 440 487 - -
Cma17g00162 493 MobiDBLite consensus disorder prediction 321 342 - -
Cma17g00162 493 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Cma17g00162 493 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 493 - -
Cma17g00162 493 ProSiteProfiles Zinc finger RING-type profile. 442 481 IPR001841 -
Cma17g00162 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 492 IPR013083 -
Cma17g00162 493 SUPERFAMILY RING/U-box 441 487 - -
Cma17g00162 493 SUPERFAMILY Ankyrin repeat 12 133 IPR036770 -
Cma17g00162 493 PANTHER ROLLING PEBBLES, ISOFORM B 1 493 - -
Cma17g00162 493 Gene3D - 4 135 IPR036770 -
Cma17g00162 493 ProSiteProfiles Ankyrin repeat region circular profile. 75 107 - -
Cma17g00162 493 MobiDBLite consensus disorder prediction 321 395 - -
Cma17g00162 493 Pfam Ankyrin repeats (many copies) 41 96 IPR002110 GO:0005515
Cma17g00162 493 SMART ANK_2a 39 69 IPR002110 GO:0005515
Cma17g00162 493 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cma17g00162 493 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Cma17g00162 493 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00162 - - - cmo:103499423 781.171
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01318 Cma17g00162 CCT
Cma14g01815 Cma17g00162 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01676 Cma-Chr14:12503100 Cma17g00162 Cma-Chr17:827734 5.12E-09 dispersed
Cma17g00162 Cma-Chr17:827734 Cma20g00696 Cma-Chr20:3189782 2.05E-12 dispersed
Cma14g01815 Cma-Chr14:13003980 Cma17g00162 Cma-Chr17:827734 1.20E-168 wgd
Cma17g00162 Cma-Chr17:827734 Cma06g01318 Cma-Chr6:8704757 5.39E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00162 Cma_Chr17 FPKM 23.139353 27.838583 16.578102 14.67801 27.970343 29.434364 24.943165 29.74556 30.464161 28.631693