Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00165 ATGGCCACTGCTATGTGGCGAAATCTCGGTCTAATGGCAGGCTTTAACCTTTCTGTCACTGAAGTGGATGCTGGAAGCTCTGACTCCCCAAATATGGGTTGCAACAAGACCATAGTATGGTTTCGGAGAGACCTCAGGATTGAGGACAACCCTGCTTTAAATGCTGCTGCTAGAGATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAGGAGGGACAATTCTATCCTGGACGGGTATCAAGGTGGTGGCTGAAGCAATCACTTGCCCATTTAAAACAGTCATTAAAATCCCTTGGTTCGGACCTCGTGCTAATGAAAACTCAGAGTACTATTTTCTCTCTTCTGGAGTGTATCAATGCTATTGGGGCAACAAAAGTAGCATTTAACTGTCTCTACGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAAAACTAGTTGAACTCGGAATTTCTGTACAGAGCTACAATGCAGATCTTTTATATGAGCCATGGGACGTATATGATGAAAATGGGAATGCTTTTACGACTTTCAAGGACTATTGGGGTAAATGTCTTCTTTTGCAGAAGGAATTTATTTCAACTCTCCCTCCATGGAAACTACAACATGCTGCAGGATCAGTGGGAAGTTGTTCCATTGAGGAACTAGGTCTTGAAAATGAATCAGAGAAATCTAGCAATGCATTACTAGCAAGAGCTTGGTCGCCAGGGTGGAGCAACGCAGATAAGGCTCTGGCTGAATTTGTAGAAAATCATCTGCTAGAATATGCGAAAAATAGGCAACAGCTTGGCGGTAGCTCGACATCTCTACTGTCCCCATACCTACATTTTGGGGAAGTAAGTGTCTGGAAGGTTTTCCAAAAAGTGAGAATGAAACAGATATTGTGGGCAAGAGAGGAAAACGCTGTAGGGGAACAAAGCACAAATCTGTTTCTCAGAGCTATAGGGCTCAGAGAGTATTCCCGTTATATATGTTTCAACTTTCCATTCACCCATGAGAGATCATTGCTGAGCAGCCTGAAGTTCTTCCCTTGGCATGCTAGCCAGAATAACTTTAAAGCTTGGAGGCAGGGTCGAACTGGCTACCCATTGGTTGATGCTGGAATGAGAGAGCTTTGGGCAACTGGATGGATACACAACAGAATAAGAGTGATTGTTTCTAGCTTTGCAGTTAAGGTTTTGCTTCTTCCTTGGAAATGGGGAATGAAGTATTTCTGGGACACTCTTTTAGATGCAGATTTGGAAAGTGATATCCTTGGTTGGCAATATATTTCTGGGAGTTTGCCAGATGGCCATGAACTTGAGAGATTGGACGATCCACAGATTCAAGGCTCCAAATACGATCCAGATGGAGAATATATTAGACATTGGCTGCCTGAGCTAGCACGAATGCCAACCGAGTGGATTCATCATCCATGGGATGCACCTCAGACTGTCCTAAAAGTTTCAGGAGTTGAGTTAGGTTTAAACTATCCTACACCGATAGTTGACTTAGACTTGGCTGCTAATCGATTGAGAGAATCCATAATCAAAATGCGGGAAATTGAAGCAGCTGCTGGGGCAAACTCAAATGGTACAAATGAAGTTGTTATGGATAATGCAGATAGGATTCAATCCTTGGGTACTGCAAATGTTGTAGCAGAGCCAAAAACCTGTGCTACTTATTCTTCTAATGATCAGAAGGTACCCATGATTCAAACTTCAAAGGTTGATAATCCATTGAGTAGGAAACGGTCTAAGCCTATGGAAGAGAAAGGAGAATTTCAATATAATATTCGCAACAACGTACAAAGTGAAGCTGGGACGTCGAAACCAGACGAAGATTTATGCTCTACTGCTGAATCTTCATCATCTAAGAAGCCATCCACCAGCAGAACTTCCTTTTCTGTTCCACAGTTTTGTTCCTCATCAAAAGGGCTGCCAGAATCATCTGAAGGAACTACTGATAGATGA 1962 42.51 MATAMWRNLGLMAGFNLSVTEVDAGSSDSPNMGCNKTIVWFRRDLRIEDNPALNAAARDGFVYPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLKQSLKSLGSDLVLMKTQSTIFSLLECINAIGATKVAFNCLYDPISLVRDHNIKEKLVELGISVQSYNADLLYEPWDVYDENGNAFTTFKDYWGKCLLLQKEFISTLPPWKLQHAAGSVGSCSIEELGLENESEKSSNALLARAWSPGWSNADKALAEFVENHLLEYAKNRQQLGGSSTSLLSPYLHFGEVSVWKVFQKVRMKQILWAREENAVGEQSTNLFLRAIGLREYSRYICFNFPFTHERSLLSSLKFFPWHASQNNFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTEWIHHPWDAPQTVLKVSGVELGLNYPTPIVDLDLAANRLRESIIKMREIEAAAGANSNGTNEVVMDNADRIQSLGTANVVAEPKTCATYSSNDQKVPMIQTSKVDNPLSRKRSKPMEEKGEFQYNIRNNVQSEAGTSKPDEDLCSTAESSSSKKPSTSRTSFSVPQFCSSSKGLPESSEGTTDR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 851311 858298 + CmaCh17G001650.1 Cma17g00165 312060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00165 653 Pfam DNA photolyase 37 190 IPR006050 -
Cma17g00165 653 MobiDBLite consensus disorder prediction 560 653 - -
Cma17g00165 653 MobiDBLite consensus disorder prediction 576 590 - -
Cma17g00165 653 Gene3D HUPs 38 237 IPR014729 -
Cma17g00165 653 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 36 512 IPR014134 GO:0009785|GO:0009882
Cma17g00165 653 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 332 532 - -
Cma17g00165 653 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 37 204 IPR036155 -
Cma17g00165 653 Gene3D - 164 324 - -
Cma17g00165 653 ProSitePatterns DNA photolyases class 1 signature 1. 363 375 IPR018394 -
Cma17g00165 653 MobiDBLite consensus disorder prediction 593 646 - -
Cma17g00165 653 PRINTS DNA photolyase signature 383 401 IPR002081 -
Cma17g00165 653 PRINTS DNA photolyase signature 363 379 IPR002081 -
Cma17g00165 653 PANTHER CRYPTOCHROME 32 614 IPR002081 -
Cma17g00165 653 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 35 164 IPR006050 -
Cma17g00165 653 Pfam FAD binding domain of DNA photolyase 314 510 IPR005101 -
Cma17g00165 653 MobiDBLite consensus disorder prediction 560 575 - -
Cma17g00165 653 ProSitePatterns DNA photolyases class 1 signature 2. 383 402 IPR018394 -
Cma17g00165 653 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 224 518 IPR036134 -
Cma17g00165 653 PANTHER CRYPTOCHROME 2B APOPROTEIN 32 614 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00165 K12119 CRY2; cryptochrome 2 - cmo:103499419 1175.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01604 Cma-Chr1:11059657 Cma17g00165 Cma-Chr17:851311 0 dispersed
Cma08g00639 Cma-Chr8:3621685 Cma17g00165 Cma-Chr17:851311 1.81E-49 dispersed
Cma17g00165 Cma-Chr17:851311 Cma17g01084 Cma-Chr17:7677955 1.14E-08 dispersed
Cma17g00165 Cma-Chr17:851311 Cma09g00556 Cma-Chr9:2529295 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006638 1 7 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00165 Cma_Chr17 FPKM 12.960367 13.76611 58.569546 55.986378 20.294073 19.614609 23.515486 63.147594 58.749397 62.742245