Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00167 ATGGTGAATTTGAAGGGGTGGATGCACGGTGTCCCAACGAGACTATTAGACCTGAAGAGATTGACCAAGAGAAGAGAGGTGGATGGTGAGATCAATGGAGCCATCTCCCTGTCCGAAAGAAACAGAGGAATAGCCGCCTCCTTTCATGAATCACAATTCCCCTTCATCATTTCTTCCAAAATTTCAATGAATTCTTCGTTCTTTCACTCCCAAAACGCCGATTTCTCGCCGGAATCTTCCTTCGGCTCCTTCGAATCACTGCTATGGGAAGGTTTCCAAATCAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGGGTACCCACCGGAGATTTCCCTCCGGCAGGCTCCGATCAAAGACGAGGAGGTCGATTCCCTCGGAGAAGAAGAACCCCACAAGCGAAAATGCTACAGAGGAGTCCGCCGCCGGCCATGGGGAAAATTCGCGGCGGAAATACGGGACTCGACCCGAAATGGGGCTCGGGTTTGGCTCGGAACATTCGACAGTGCCGAGGCGGCTGCTTTAGCCTATGATCAAGCTGCTTTTTCAATGAGGGGTTCCACCGCCGTTCTTAATTTTCCAGTGGAAAGAGTTCAGGAATCGCTGAAGGAAATGGAGATGATAAACTCCAGTGAAAACGGCGGCGACGGCGGATCTCCGGTGGTGGCGCTGAAGAGAAAACACTCGATGAGGAAGAAATTCACAAGGAGAAAGAGCAAAGAAAGAGATGGGAGTGGAACGATTGAGAATAATGTGGTTGTTTTGGAAGATCTTGGGCCTGATTATTTGGAAGAACTTCTAGAGTCGTCGGAGAATCTCCGGCCATAG 870 50.23 MVNLKGWMHGVPTRLLDLKRLTKRREVDGEINGAISLSERNRGIAASFHESQFPFIISSKISMNSSFFHSQNADFSPESSFGSFESLLWEGFQINDNSLPFNENDSGEMLLHSLISEAAGYPPEISLRQAPIKDEEVDSLGEEEPHKRKCYRGVRRRPWGKFAAEIRDSTRNGARVWLGTFDSAEAAALAYDQAAFSMRGSTAVLNFPVERVQESLKEMEMINSSENGGDGGSPVVALKRKHSMRKKFTRRKSKERDGSGTIENNVVVLEDLGPDYLEELLESSENLRP 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 862949 863889 - CmaCh17G001670.1 Cma17g00167 312062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00167 289 PANTHER DNA-BINDING DOMAIN 93 283 IPR044808 GO:0003700|GO:0009873
Cma17g00167 289 Pfam AP2 domain 150 200 IPR001471 GO:0003700|GO:0006355
Cma17g00167 289 Gene3D AP2/ERF domain 150 210 IPR036955 GO:0003700|GO:0006355
Cma17g00167 289 SUPERFAMILY DNA-binding domain 150 210 IPR016177 GO:0003677
Cma17g00167 289 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Cma17g00167 289 CDD AP2 151 209 IPR001471 GO:0003700|GO:0006355
Cma17g00167 289 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Cma17g00167 289 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Cma17g00167 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 93 283 - -
Cma17g00167 289 MobiDBLite consensus disorder prediction 223 264 - -
Cma17g00167 289 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00167 Cma-Chr17:862949 Cma07g00206 Cma-Chr7:957489 5.93E-33 dispersed
Cma17g00167 Cma-Chr17:862949 Cma19g00084 Cma-Chr19:506769 1.94E-42 wgd
Cma17g00167 Cma-Chr17:862949 Cma02g01751 Cma-Chr2:9801242 3.17E-50 wgd
Cma17g00167 Cma-Chr17:862949 Cma06g01330 Cma-Chr6:8751295 4.59E-65 wgd
Cma17g00167 Cma-Chr17:862949 Cma08g01086 Cma-Chr8:6782139 3.32E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36630 PF00847 AP2 9.20E-16 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00167 K14516 - csv:101206564 353.599