Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00169 ATGGAAAAACCCCTCATCTCTCCGTCGGCCACTCCGCTTCACTCCTCCACCTCCGTTTCAAGTTTTCCAATCATCGCCGTTGCCGTCATCGGAATCTGCGCCACTGCGTTCTTACTCGTCGGCTATTACATCTTCGTCATCAAATGCTGCCTCAACTGGCAACGAATTGAAATCCTCCGCCGGTTTTCCCTTTCCCGCCGCCGTGAAGAGACATTAATACTCCGGCAGCCAGCGGATCCACGTGGGTTAGACCCATCAACGATTCAATCAATCCCATTGATTAATTACAAGAAACCCATTAAGGAAACAGCCAGTGGTGGCGAATGCGCCGTTTGCCTGACGGAGTTTCGGCCGGAGGAGCAATTGAGAAAGATTCCGATTTGTAGCCATCTCTTTCATATTGATTGCATTGACATTTGGCTTCAGAATAATCCCAATTGCCCACTTTGTAGAACCTCAATCTCCGCCCAAAATTGGCTGATTCCGGTCGATCAAGCCCCTTCCCCTCGAGATTTGGCTCTCAATTCCGGCAGCTCCGTCGATGCCACCACCGCCGATGAGAATTTCGTTGTGATTGAACTTGGTCGGAATCCCGACCGCCGCCGTCCTCCACCGTTTGGAAAGGTTACGAGTATGGGGGATGAGTGTATTGACATGAGGGAGAAGGATAAGGAGTTTTTAGTGCAGCCCATTAGGAGGTCGTTTTCGATGGATTCTTCCGGCGACCGGCAGCTGTACATGGCGGTGCAGGCGGCGGTGCGGCAGAGCGGCGGCGGTGAGAGTAGGGTTGAGGCAGAGGGTTGCAGTAACAGAGTACGAAGATCTTTCTTTTCTTTTGGAAGTGGCAGAGGATCTAGAAATGGAGTTTTGCCCATTCAGCTTCAACCTTAA 891 51.4 MEKPLISPSATPLHSSTSVSSFPIIAVAVIGICATAFLLVGYYIFVIKCCLNWQRIEILRRFSLSRRREETLILRQPADPRGLDPSTIQSIPLINYKKPIKETASGGECAVCLTEFRPEEQLRKIPICSHLFHIDCIDIWLQNNPNCPLCRTSISAQNWLIPVDQAPSPRDLALNSGSSVDATTADENFVVIELGRNPDRRRPPPFGKVTSMGDECIDMREKDKEFLVQPIRRSFSMDSSGDRQLYMAVQAAVRQSGGGESRVEAEGCSNRVRRSFFSFGSGRGSRNGVLPIQLQP 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 877257 878147 + CmaCh17G001690.1 Cma17g00169 312064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00169 296 SUPERFAMILY RING/U-box 103 158 - -
Cma17g00169 296 CDD RING-H2_PA-TM-RING 108 151 - -
Cma17g00169 296 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cma17g00169 296 PANTHER RING-H2 FINGER PROTEIN ATL16 10 295 IPR044600 GO:0016567|GO:0016740
Cma17g00169 296 Pfam Ring finger domain 108 151 IPR001841 -
Cma17g00169 296 PANTHER RING-H2 FINGER PROTEIN ATL16 10 295 - -
Cma17g00169 296 SMART ring_2 109 150 IPR001841 -
Cma17g00169 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00169 - - - csv:101221539 465.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01332 Cma17g00169 CCT
Cma06g01332 Cma17g00169 ECH
Cma08g01088 Cma17g00169 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00169 Cma-Chr17:877257 Cma19g00231 Cma-Chr19:1586009 1.21E-28 dispersed
Cma17g00169 Cma-Chr17:877257 Cma02g01753 Cma-Chr2:9809440 2.73E-73 wgd
Cma17g00169 Cma-Chr17:877257 Cma06g01332 Cma-Chr6:8762619 2.77E-75 wgd
Cma17g00169 Cma-Chr17:877257 Cma08g01088 Cma-Chr8:6792050 5.31E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g674 Blo01g00093 . Bda03g00844 . Bpe04g00798 . Bma04g00744 Bma05g01070 . Cmo17g00166 Cma06g01332 . . . . . . . . . . . . . Cla06g00655 Cam06g0700 Cec06g0705 Cco06g0713 Clacu06g0687 Cmu06g0678 Cre06g1447 Cone14ag0146 Cone15ag0155 Cone7ag0316 Cone4ag0321 Lsi05g01721 Csa02g01073 Chy05g00333 Cme06g00503 . . . . Bpe05g00861 . . . Sed02g1401 Cmo06g01336 . Cma08g01088 Cma17g00169 Car08g00963 Car17g00148 Cpe12g00145 Cpe17g00190 Bhi12g01632 Tan06g2420 Cmetu06g0958 Lac12g2188 Hepe03g0272 . Lcy13g0365 Cla05g00454 Cam05g0495 Cec05g0504 Cco05g0503 Clacu05g0490 Cmu05g0467 Cre05g0530 Lsi09g01242 . Chy06g00482 Cme05g00554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002450 1 1 1 2 2 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 1 2 2 2 2 2 2 3 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00169 Cma_Chr17 FPKM 3.681257 4.073668 0.13115 0.085389 1.213788 1.38334 1.828831 0.080144 0.0 0.0