Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00173 ATGGGGTTCTTCTCTTTCCTTGGAAGGGTCCTCTTTGCCTCGCTGTTCATCCTCTCCGCCTGGCAAATGTTCAATGAATTTGGCACTGATGGTGGACCTGCTGCAAAGGAACTCATTCCGAAGTTGTACACTCTTAGGAGAAACGTCTCCGCTCAATTTGGATTCGACCTACCCGTTATCGACGTTTCCCATTTAGTTGCTGCGTTTTTGTCTCTTAAAGGCATTGGTGGCCTTCTCTTTGTATTTGGGAGTCCAATTGGAGCTTATCTCCTGCTTCTTTACTTGGCAATTAGCACACCAATTCTGTATGATTTTTTCAACTATGGTCGTGACAAGTCCCAATTCAGTATACTAATGAATGATTTCTTACTGCACGTGGCACTTGCTGGTGCATTGCTCTTCTTCATCGGAACGAAGAACTCGATTTCGAGGAGGCAACAGAAGAAGAAGGCACACAAAGCCAAAACGAACTAG 474 44.94 MGFFSFLGRVLFASLFILSAWQMFNEFGTDGGPAAKELIPKLYTLRRNVSAQFGFDLPVIDVSHLVAAFLSLKGIGGLLFVFGSPIGAYLLLLYLAISTPILYDFFNYGRDKSQFSILMNDFLLHVALAGALLFFIGTKNSISRRQQKKKAHKAKTN 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 895209 897863 + CmaCh17G001730.1 Cma17g00173 312068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00173 157 Pfam HR-like lesion-inducing 1 137 IPR008637 -
Cma17g00173 157 PANTHER - 1 157 - -
Cma17g00173 157 PANTHER BNAA10G27800D PROTEIN 1 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00173 - - - csv:101220044 256.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01800 Cma17g00173 CCT
Cma08g01093 Cma17g00173 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01337 Cma-Chr6:8777013 Cma17g00173 Cma-Chr17:895209 3.63E-39 dispersed
Cma08g01092 Cma-Chr8:6806527 Cma17g00173 Cma-Chr17:895209 1.38E-49 dispersed
Cma08g01093 Cma-Chr8:6810693 Cma17g00173 Cma-Chr17:895209 9.10E-82 dispersed
Cma14g01800 Cma-Chr14:12956414 Cma17g00173 Cma-Chr17:895209 1.16E-55 dispersed
Cma17g00172 Cma-Chr17:890602 Cma17g00173 Cma-Chr17:895209 2.64E-46 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g650 . . . . . . . . Cmo08g01069 Cmo17g00170 . Cma14g01800 Car06g01147 Car14g01617 . . Cpe03g01508 . . . . . . . Cla06g00649 Cam06g0694 Cec06g0698 Cco06g0704 Clacu06g0681 Cmu06g0672 Cre06g1441 . . Cone7ag0312 Cone4ag0315 Lsi05g01704 Csa02g01078 Chy05g00338 . . . Bda11g00623 Bda13g00073 . . Bma02g00794 Bma06g01594 Sed09g0698 . Cmo14g01838 Cma08g01093 Cma17g00173 Car08g00968 Car17g00153 Cpe12g00149 Cpe17g00186 Bhi12g01639 Tan06g2429 Cmetu05g0143 . . . Lcy13g0355 . . . . . . . Lsi09g01248 . . Cme05g00547
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002712 1 2 2 2 1 1 4 1 1 1 1 1 3 2 2 3 1 2 4 1 1 2 2 2 2 1 2 6 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00173 Cma_Chr17 FPKM 44.711441 45.611816 26.378035 25.020374 32.759769 34.337265 38.989895 20.84165 20.02442 24.546671