Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00175 ATGGTTGCAGAGCCTTGGATTGTCAAAATGGGTAACCAGGTTAGCGCTAATCTCAAACAAGCCCTCCTCGAGCCTTCTAAGAACAAGAACAATGGCAATAATAAGCAAACAATCGGTATTCTATCTTTTGAAGTTGCTAATATAATGTCCAAAACGATTTACCTTCATAAATCTCTGTCTGATTCTGCCATTTCTAAGCTCAAGAACGAGATCTTGAGCTCCGATGGTGTTAAAAACCTTGTCTCTTCTGATGATGTTCATCTTCTTGAGCTTGTGGTTCTTGAGAAGCTTGAGGATTTGAACCGAGTGGCTAATGTGGTATCTAGGCTTGGTAGGAAGTGTTCACAACCTGCGCTACAAGGGTTTAAACATGTGTATTTGGATATCATTAATGGAGCTATAAATGTGAAGGAATTGGGGTTTTTGGTTAAGGATATGGAGGGAATGATGAGGAAAATGGAGAGGTTTGTGAATGTTACAGCGAATTTGTACACTGAAATGGAGGTTTTGAATGAATTAGAACAGGCTGCTAAGAAGTTTCAGAACAATCAGCATGAACAAACTAGAAAAGCTTATGAACAGAAACTCTTATGGCAAAAACAGGACGTGGGGCATTTGAAGGAGATTTCTTTATGGAATCAAACGTTTGATAAGGTTGTTGAATTGCTTGTAAGAACTGTTTGTACGGTTTATGCGAGGATTCATCATGTTCGGATCGATGCAGAGTCGATGGAATCGAAACGTGTGTTCATTGAGAGAGGCCATGGAGCGAGACGCGGGTCGAGTTTCAAATCTCAAGTTAGCTCTAAAAGAAGCGAGGTTCCATTGTTTGATGACTTCAATTTTCCTTGTGGAACGAATCCCGGGAGGGTTCTTATGGATTGCCTTAGTTTAAGTAGTTCTGGTGATGAGGATAGTTATGTCGACCACGACGATCCAAGCTGCCAACGCTCGGGTCGTAGCATTAGGAACAGTGGCTCCAGTCAGGTGCAGTTCTCTGTTCCATTCGGAGTGGATTTAAGACAAGCAAACAATGGAGGAAACTTCGGGTTCAAGAGTAGATTATTATCGGTCTATGCAGCGGTTTCGACTGTCGGAGGCTCGGCTCTTGCTTTACATTATGCAAATATCATCATTGTTATAGAGAAATTGCTTCGTTATCCTCATTTAGTTGGCGACGAAGCTCGGGACGATTTGTATGAGATGCTACCAACAAGTTTAAGATCATCCATGAAAACGCATTTGAAGTCTTATGTTAAGAACATGGCTATATATGATGCTCCTCTTGCCCATGATTGGAAGGAGACACTCGATGGGATCTTGAGCTGGCTCGCTCCGTTGGCACACAACATGATTCGATGGCAAACCGAGCGTAATTTTGAACAACATCAGATCATGACTCGAACGAATGTCTTGCTGATCCAAACTTTGTACTTTGCCGATCGAAAGAAGACCGAGGAAGCCATATGTGAGCTTCTTGTTGGATTGAATTACATATGTCGCTACGAGCATCAGCAAAATGCATTGCTTGATTGTGCGAGTAGTTTCGACTTTGAAGATTGTATGGAGTGGCAGTTGCAATGTAAAGCGTCTGTTTTAAAATTTTCCGCTAATCTGGCTAATTCTAATCCGTGGTGGGCTAGTCGGGTGTGCTTTCCGGCCACCGACCCGGTTTCTACCACCGTCGGCGGCTGCGGAAGAGAGCACGACAACAATGAAGACGAGCTGAAGGAAGGTAGCGTGCTGGTTGGGAACCGCCGAACGAGAGGGCGGCCACCGGGAGCGAAAAACAAACCAAAACCCCCAATCATCGTCACGCGCGACAGTCCTCACGCGCTTCGCACGCACGTGATCGAGATCGCCGGAGGAGCCGACGTGGCCGACAGCATAAACCAACTCTCCAGCCGCCGACAACGTGGGGTTTGTGTTCTCAGCGGAAACGGCACGGTTGCCGACGTGACTCTCCGGCAATCCGCCACCGTGATCCAACTTCACGGCCTGTTCGATATTCTATCACTGAGCGGCTCTTTTCTTCCCGGTCCAGCCATCCCCTGTTCCACTAGACTGACCGTGTACCTCGCCGGTGGTCAAGGGCAGGTGGTCGGAGGGACAGTGGTGGGCCCTTTGTTGGCGGCTGGGCCTGTCATTTTGATAGCTGCTACTTTTGCTAATGCAATTTATGAGAGACTGCCTTTACAAGACGACCATGATTATCAAGAAACAGAGGTTTCTCCGACCGCTATAGATGGCGGAGAAGTGGAGGAGCCGCCGCCTCCGCCGCCGTATCCCCGGACGACAACTTCAATTTATGACTTGATGACACCAAATAATGATCATGAAATGGGAATTGATAAGGTTTGGTTGGGCTCAGCTTAA 2376 46.42 MVAEPWIVKMGNQVSANLKQALLEPSKNKNNGNNKQTIGILSFEVANIMSKTIYLHKSLSDSAISKLKNEILSSDGVKNLVSSDDVHLLELVVLEKLEDLNRVANVVSRLGRKCSQPALQGFKHVYLDIINGAINVKELGFLVKDMEGMMRKMERFVNVTANLYTEMEVLNELEQAAKKFQNNQHEQTRKAYEQKLLWQKQDVGHLKEISLWNQTFDKVVELLVRTVCTVYARIHHVRIDAESMESKRVFIERGHGARRGSSFKSQVSSKRSEVPLFDDFNFPCGTNPGRVLMDCLSLSSSGDEDSYVDHDDPSCQRSGRSIRNSGSSQVQFSVPFGVDLRQANNGGNFGFKSRLLSVYAAVSTVGGSALALHYANIIIVIEKLLRYPHLVGDEARDDLYEMLPTSLRSSMKTHLKSYVKNMAIYDAPLAHDWKETLDGILSWLAPLAHNMIRWQTERNFEQHQIMTRTNVLLIQTLYFADRKKTEEAICELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQLQCKASVLKFSANLANSNPWWASRVCFPATDPVSTTVGGCGREHDNNEDELKEGSVLVGNRRTRGRPPGAKNKPKPPIIVTRDSPHALRTHVIEIAGGADVADSINQLSSRRQRGVCVLSGNGTVADVTLRQSATVIQLHGLFDILSLSGSFLPGPAIPCSTRLTVYLAGGQGQVVGGTVVGPLLAAGPVILIAATFANAIYERLPLQDDHDYQETEVSPTAIDGGEVEEPPPPPPYPRTTTSIYDLMTPNNDHEMGIDKVWLGSA 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 904430 908313 + CmaCh17G001750.1 Cma17g00175 312070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00175 791 PANTHER BNAC09G50660D PROTEIN 1 528 - -
Cma17g00175 791 Pfam Domain of unknown function (DUF3475) 40 96 IPR021864 GO:0045927
Cma17g00175 791 Coils Coil 170 190 - -
Cma17g00175 791 PANTHER PLANT/PROTEIN (DUF668) 1 528 - -
Cma17g00175 791 Gene3D - 613 746 - -
Cma17g00175 791 Pfam Protein of unknown function (DUF668) 364 453 IPR007700 GO:0045927
Cma17g00175 791 MobiDBLite consensus disorder prediction 742 762 - -
Cma17g00175 791 MobiDBLite consensus disorder prediction 302 327 - -
Cma17g00175 791 Pfam Plants and Prokaryotes Conserved (PCC) domain 614 723 IPR005175 -
Cma17g00175 791 MobiDBLite consensus disorder prediction 565 603 - -
Cma17g00175 791 SUPERFAMILY AF0104/ALDC/Ptd012-like 612 734 - -
Cma17g00175 791 MobiDBLite consensus disorder prediction 567 584 - -
Cma17g00175 791 ProSiteProfiles PPC domain profile profile. 610 744 IPR005175 -
Cma17g00175 791 CDD DUF296 614 694 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01095 Cma17g00175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01097 Cma-Chr8:6829001 Cma17g00175 Cma-Chr17:904430 5.96E-87 dispersed
Cma14g00267 Cma-Chr14:1146642 Cma17g00175 Cma-Chr17:904430 4.94E-60 dispersed
Cma16g00174 Cma-Chr16:760969 Cma17g00175 Cma-Chr17:904430 1.74E-26 dispersed
Cma17g00175 Cma-Chr17:904430 Cma06g01130 Cma-Chr6:7608057 5.75E-63 dispersed
Cma18g01196 Cma-Chr18:9495677 Cma17g00175 Cma-Chr17:904430 9.47E-35 dispersed
Cma07g01006 Cma-Chr7:5217100 Cma17g00175 Cma-Chr17:904430 8.18E-70 transposed
Cma17g00175 Cma-Chr17:904430 Cma06g01339 Cma-Chr6:8796348 6.67E-62 wgd
Cma17g00175 Cma-Chr17:904430 Cma08g01095 Cma-Chr8:6821815 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00175 - - csv:101220789 900.968