Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00176 ATGGGCTTATATAAACAAGGAACAGAAACAGGTCGCACTCCGACACCGTTCCCGGAATCGCGACTTCACTCTGATGCCTTAATACAATCCCAAGCAATCCACAGTATTATGGAGACTGAAGGTACAGATGTTTGCATGGATAAAGAGCCAGATCGTGTTATAACGTATTCCTCTAGAGGTGGTTCCCATGCTTCATCTTGTGAAGATAGCCTCAGTCATCAGGATGTCATGGAGTCATTTTGCGAAATAAATGGGGATCACGATATCAACAATTCAGAAGAGGGAAGTGAATCAAAGGAATATGAAGTGAAGGAATGTACAAATGAAAAATCAATCAAGATTCCTGAAATGCACCCTTCAAAGAAACCAGGCCAACAGAAAAATGTGGTTAGCAGGTTGACTAATGAAAAAGAGAGACTGGAGGAGAAGGTACAAGAAGGAAAGAACGATGAGAAATTACTGTTAACTGTGAATTCATTGAAATCTTCTGCTGGAAATGCTCGTTCAAGACATACTGTTCCACAGCCATTTGCCTTGGCAACGGAGAAGCGTGCTTCATCGGGTACTCGACTTCCCAGCGCTATCACCACTGAAAAATCTACCAAAAACAATATTCGGCCTGCAAAGACCAAATCAAATCAGCCCACATCTCCTAGGGTGTTGAGGAAGCCACTGCAACCTAATAACAAGAAGCATGCTGACGAGGAAGATTCCTGCTCTGCGGTTTCCGTCAGTGCAGCATCAACTCGGGCTATCAAGACCAGAATTACTGTTGCATCAGTTCCTGCATTGAGGTGCACAGAGCGTGCAGAGAAAAGGAAGGAGTTTAATTCGAAATTGGAGGAAAAACTCCAGGCTCTGGTGGCTGAGAAGACCGAGTGTGAGACGAAGTCCAAGGAAGAGACTGAGGCCGCTATCAAACAACTAAGAAAGAGTTTATTATTCAAAGCAAATCCAATGCCAAGCTTCTACCACGATGGGCCTCCTGCCAAGGCTGAGCTGAAAAAGCTCCCACCAACTCGTGCAAGGTCACCTAAACTTGGCCGACGTAAGAGTTGCAACAATGCGGTTCTATCCAATGGAGACAAGATAAAATTCAGTCATGGCAAGGGAAATGGCCATCGTACCGACAGTTCCAACAGAGATACTATTGCATTGGATGTCACTGAGAATCGGAGCAATGTCATTCGCTTTGTAGAAAACGAGCTGAAGCAAGGAGAAGCCTTTTGCGAGGTGATTTCTATTGATGTAAATGGTCCAAACAATACAAATATTTCTGTCCAGTCTTAA 1290 44.11 MGLYKQGTETGRTPTPFPESRLHSDALIQSQAIHSIMETEGTDVCMDKEPDRVITYSSRGGSHASSCEDSLSHQDVMESFCEINGDHDINNSEEGSESKEYEVKECTNEKSIKIPEMHPSKKPGQQKNVVSRLTNEKERLEEKVQEGKNDEKLLLTVNSLKSSAGNARSRHTVPQPFALATEKRASSGTRLPSAITTEKSTKNNIRPAKTKSNQPTSPRVLRKPLQPNNKKHADEEDSCSAVSVSAASTRAIKTRITVASVPALRCTERAEKRKEFNSKLEEKLQALVAEKTECETKSKEETEAAIKQLRKSLLFKANPMPSFYHDGPPAKAELKKLPPTRARSPKLGRRKSCNNAVLSNGDKIKFSHGKGNGHRTDSSNRDTIALDVTENRSNVIRFVENELKQGEAFCEVISIDVNGPNNTNISVQS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 916067 918953 + CmaCh17G001760.1 Cma17g00176 312071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00176 429 MobiDBLite consensus disorder prediction 162 237 - -
Cma17g00176 429 Pfam Targeting protein for Xklp2 (TPX2) domain 263 332 IPR027329 -
Cma17g00176 429 MobiDBLite consensus disorder prediction 132 147 - -
Cma17g00176 429 Coils Coil 130 150 - -
Cma17g00176 429 MobiDBLite consensus disorder prediction 1 21 - -
Cma17g00176 429 Coils Coil 277 297 - -
Cma17g00176 429 PANTHER PROTEIN WVD2-LIKE 3 37 390 - -
Cma17g00176 429 MobiDBLite consensus disorder prediction 186 223 - -
Cma17g00176 429 PANTHER PROTEIN WVD2-LIKE 3 37 390 IPR044806 GO:0000226|GO:0008017
Cma17g00176 429 MobiDBLite consensus disorder prediction 115 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00176 - - - cmos:111459945 714.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01104 Cma17g00176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00976 Cma-Chr11:5196911 Cma17g00176 Cma-Chr17:916067 5.24E-54 dispersed
Cma12g01132 Cma-Chr12:8920977 Cma17g00176 Cma-Chr17:916067 9.18E-41 dispersed
Cma14g00376 Cma-Chr14:1709496 Cma17g00176 Cma-Chr17:916067 7.63E-21 dispersed
Cma17g00176 Cma-Chr17:916067 Cma06g00543 Cma-Chr6:2567329 1.68E-24 dispersed
Cma17g00176 Cma-Chr17:916067 Cma08g01104 Cma-Chr8:6849356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g620 . . . . . Bpe14g01230 . . Cmo08g01076 Cmo17g00174 . . . . . . . . . . . . . . Cla06g00640 Cam06g0684 Cec06g0687 Cco06g0693 Clacu06g0670 Cmu06g0662 Cre06g1430 . . Cone7ag0300 Cone4ag0301 . Csa02g01086 Chy05g00348 . Blo02g00609 . . . . . . . Sed09g0705 . . Cma08g01104 Cma17g00176 Car08g00977 Car17g00158 Cpe12g00152 Cpe17g00179 Bhi12g01656 Tan06g2442 Cmetu05g0483 Lac12g2205 Hepe03g0258 . Lcy13g0344 . . . . . . . Lsi09g01259 . . Cme05g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008644 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00176 Cma_Chr17 FPKM 32.177906 34.109016 8.059571 6.269753 15.829064 16.562162 14.255096 4.259132 3.975791 3.848871