Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00187 | ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGACGCTCACTGTGAAGAAGAAGAAGCAATCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGCACCGTCCTCGATGCCGACAAGTATCAAATTATGCATCGGGTTCAAATTCATGCGCGCGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTTCTTAGAGATCCGACCGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGGCTGCCTCCTTCTAATGCGGTCCAGCTTCATGTTCAAGGAGATGGGAAAGCGTATCAGGGTCGGCAACACGACGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAGGTAGCTTTGGAAGCTATATGCAGTTATCTTGCTGCACGAACAACTGAGCTCGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGAAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGCTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGAATGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAATTCGTCTTCTCCTGTAAGTGGTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATATCAAGAGCGAGCCGAGCAAGTATGGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATACATTGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGCTCTGGAACTGTTTGTTTGTCTATATATTCTTTGGTGGGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGAAAATCACGAATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGATAATGTTCGTTGCAATTATTTACTATGCTCGCCTCAAAGGTTTGGTCGGATCTTGA | 1182 | 45.52 | MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEHVIPVVEELQRRLPPSNAVQLHVQGDGKAYQGRQHDGEAEEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACAIMFVAIIYYARLKGLVGS | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 979088 | 983016 | - | CmaCh17G001870.1 | Cma17g00187 | 312082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00187 | 393 | Gene3D | Magnesium transport protein CorA, transmembrane region | 104 | 323 | - | - | |
Cma17g00187 | 393 | Gene3D | - | 14 | 99 | - | - | |
Cma17g00187 | 393 | CDD | Mrs2_Mfm1p-like | 28 | 390 | IPR039204 | - | |
Cma17g00187 | 393 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 1 | 393 | IPR039204 | - | |
Cma17g00187 | 393 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 329 | 381 | IPR045863 | - | |
Cma17g00187 | 393 | PANTHER | MAGNESIUM TRANSPORTER MRS2-I | 1 | 393 | - | - | |
Cma17g00187 | 393 | Pfam | CorA-like Mg2+ transporter protein | 273 | 380 | IPR002523 | GO:0016020|GO:0030001|GO:0046873|GO:0055085 | |
Cma17g00187 | 393 | Coils | Coil | 194 | 221 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g01112 | Cma17g00187 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00540 | Cma-Chr4:2745971 | Cma17g00187 | Cma-Chr17:979088 | 3.31E-108 | dispersed | |
Cma13g00268 | Cma-Chr13:2193822 | Cma17g00187 | Cma-Chr17:979088 | 3.33E-19 | dispersed | |
Cma14g01051 | Cma-Chr14:5538346 | Cma17g00187 | Cma-Chr17:979088 | 6.41E-119 | dispersed | |
Cma16g00389 | Cma-Chr16:1901032 | Cma17g00187 | Cma-Chr17:979088 | 1.77E-97 | dispersed | |
Cma17g00187 | Cma-Chr17:979088 | Cma01g00188 | Cma-Chr1:840566 | 4.93E-107 | dispersed | |
Cma17g00187 | Cma-Chr17:979088 | Cma19g00058 | Cma-Chr19:314382 | 1.12E-163 | wgd | |
Cma17g00187 | Cma-Chr17:979088 | Cma08g01112 | Cma-Chr8:6896552 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00187 | K16075 | - | csv:101203841 | 694.501 |