Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00187 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGACGCTCACTGTGAAGAAGAAGAAGCAATCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGCACCGTCCTCGATGCCGACAAGTATCAAATTATGCATCGGGTTCAAATTCATGCGCGCGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTTCTTAGAGATCCGACCGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGGCTGCCTCCTTCTAATGCGGTCCAGCTTCATGTTCAAGGAGATGGGAAAGCGTATCAGGGTCGGCAACACGACGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAGGTAGCTTTGGAAGCTATATGCAGTTATCTTGCTGCACGAACAACTGAGCTCGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGAAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGCTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGAATGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAATTCGTCTTCTCCTGTAAGTGGTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATATCAAGAGCGAGCCGAGCAAGTATGGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATACATTGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGCTCTGGAACTGTTTGTTTGTCTATATATTCTTTGGTGGGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGAAAATCACGAATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGATAATGTTCGTTGCAATTATTTACTATGCTCGCCTCAAAGGTTTGGTCGGATCTTGA 1182 45.52 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEHVIPVVEELQRRLPPSNAVQLHVQGDGKAYQGRQHDGEAEEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACAIMFVAIIYYARLKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 979088 983016 - CmaCh17G001870.1 Cma17g00187 312082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00187 393 Gene3D Magnesium transport protein CorA, transmembrane region 104 323 - -
Cma17g00187 393 Gene3D - 14 99 - -
Cma17g00187 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Cma17g00187 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 393 IPR039204 -
Cma17g00187 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
Cma17g00187 393 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 393 - -
Cma17g00187 393 Pfam CorA-like Mg2+ transporter protein 273 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma17g00187 393 Coils Coil 194 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01112 Cma17g00187 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00540 Cma-Chr4:2745971 Cma17g00187 Cma-Chr17:979088 3.31E-108 dispersed
Cma13g00268 Cma-Chr13:2193822 Cma17g00187 Cma-Chr17:979088 3.33E-19 dispersed
Cma14g01051 Cma-Chr14:5538346 Cma17g00187 Cma-Chr17:979088 6.41E-119 dispersed
Cma16g00389 Cma-Chr16:1901032 Cma17g00187 Cma-Chr17:979088 1.77E-97 dispersed
Cma17g00187 Cma-Chr17:979088 Cma01g00188 Cma-Chr1:840566 4.93E-107 dispersed
Cma17g00187 Cma-Chr17:979088 Cma19g00058 Cma-Chr19:314382 1.12E-163 wgd
Cma17g00187 Cma-Chr17:979088 Cma08g01112 Cma-Chr8:6896552 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00187 K16075 - csv:101203841 694.501