Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00187 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGACGACGCTCACTGTGAAGAAGAAGAAGCAATCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGCACCGTCCTCGATGCCGACAAGTATCAAATTATGCATCGGGTTCAAATTCATGCGCGCGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTTCTTAGAGATCCGACCGATGAACATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGGCTGCCTCCTTCTAATGCGGTCCAGCTTCATGTTCAAGGAGATGGGAAAGCGTATCAGGGTCGGCAACACGACGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAGGTAGCTTTGGAAGCTATATGCAGTTATCTTGCTGCACGAACAACTGAGCTCGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGAAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGCTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGAATGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAATTCGTCTTCTCCTGTAAGTGGTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATATCAAGAGCGAGCCGAGCAAGTATGGCAACTGTACGTGGGGATGAGGATGACATCGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATACATTGATGACACAGAAGATTATATCAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGCTCTGGAACTGTTTGTTTGTCTATATATTCTTTGGTGGGTGCAATATTCGGCATGAACATTCCATACACTTGGAATGAAAATCACGAATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGATAATGTTCGTTGCAATTATTTACTATGCTCGCCTCAAAGGTTTGGTCGGATCTTGA 1182 45.52 MARDGHVVPVDPQTTLTVKKKKQSSRNWILLDCTGQGTVLDADKYQIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVFLRDPTDEHVIPVVEELQRRLPPSNAVQLHVQGDGKAYQGRQHDGEAEEDDSPFEFRALEVALEAICSYLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLNDDDDMADLYLSRKMNSSSPVSGSGPAIWFPASPTIGSKISRASRASMATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNENHEYMFKWVVIVSGVACAIMFVAIIYYARLKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 979088 983016 - CmaCh17G001870.1 Cma17g00187 312082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00187 393 Gene3D Magnesium transport protein CorA, transmembrane region 104 323 - -
Cma17g00187 393 Gene3D - 14 99 - -
Cma17g00187 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Cma17g00187 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 393 IPR039204 -
Cma17g00187 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
Cma17g00187 393 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 393 - -
Cma17g00187 393 Pfam CorA-like Mg2+ transporter protein 273 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma17g00187 393 Coils Coil 194 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00187 K16075 MRS2, MFM1; magnesium transporter - csv:101203841 694.501
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01112 Cma17g00187 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00540 Cma-Chr4:2745971 Cma17g00187 Cma-Chr17:979088 3.31E-108 dispersed
Cma13g00268 Cma-Chr13:2193822 Cma17g00187 Cma-Chr17:979088 3.33E-19 dispersed
Cma14g01051 Cma-Chr14:5538346 Cma17g00187 Cma-Chr17:979088 6.41E-119 dispersed
Cma16g00389 Cma-Chr16:1901032 Cma17g00187 Cma-Chr17:979088 1.77E-97 dispersed
Cma17g00187 Cma-Chr17:979088 Cma01g00188 Cma-Chr1:840566 4.93E-107 dispersed
Cma17g00187 Cma-Chr17:979088 Cma19g00058 Cma-Chr19:314382 1.12E-163 wgd
Cma17g00187 Cma-Chr17:979088 Cma08g01112 Cma-Chr8:6896552 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g01051 . 1 447 MRS2 Gene Family AT1G16010 84.3 1.8e-205 712.6
Cma01g00188 . 1 426 MRS2 Gene Family AT1G16010 83.8 1.1e-191 666.8
Cma19g00058 . 35 370 MRS2 Gene Family AT1G16010 50.5 2.2e-83 307.0
Cma17g00187 CST 1 366 MRS2 Gene Family AT5G64560 79.3 4.4e-157 551.6
Cma08g01112 CST 1 358 MRS2 Gene Family AT5G64560 79.6 3.7e-156 548.5
Cma19g00058 . 1 379 MRS2 Gene Family AT5G64560 68.7 4.2e-131 465.3
Cma11g01693 CST 39 498 MRS2 Gene Family AT3G19640 64.4 6.7e-150 528.1
Cma19g00542 CST 1 217 MRS2 Gene Family AT3G19640 57.1 7.1e-59 225.7
Cma04g00540 . 1 458 MRS2 Gene Family AT3G58970 62.5 2.2e-144 509.6
Cma16g00389 . 59 439 MRS2 Gene Family AT3G58970 68.1 2.7e-134 476.1
Cma14g01051 . 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cma01g00188 . 13 426 MRS2 Gene Family AT2G03620 54.3 5.5e-108 388.7
Cma12g00103 . 138 402 MRS2 Gene Family AT2G03620 60.4 2.4e-87 320.1
Cma04g00540 . 63 457 MRS2 Gene Family AT4G28580 50.3 2.9e-90 329.7
Cma16g00389 . 59 439 MRS2 Gene Family AT4G28580 50.7 1.5e-89 327.4
Cma08g01112 CST 1 320 MRS2 Gene Family AT5G09690 77.8 2.8e-128 455.7
Cma17g00187 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cma19g00058 . 1 332 MRS2 Gene Family AT5G09690 66.1 8.5e-109 391.0
Cma01g00188 . 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cma14g01051 . 40 383 MRS2 Gene Family AT5G09690 50.6 4.5e-78 288.9
Cma08g01112 CST 23 280 MRS2 Gene Family AT5G09720 70.5 3.6e-90 328.9
Cma17g00187 CST 23 288 MRS2 Gene Family AT5G09720 66.8 2.9e-87 319.3
Cma19g00058 . 34 292 MRS2 Gene Family AT5G09720 62.0 1.5e-75 280.4
Cma14g01051 . 1 447 MRS2 Gene Family AT1G80900 82.8 3.8e-200 694.9
Cma01g00188 . 1 426 MRS2 Gene Family AT1G80900 83.3 2.0e-188 656.0
Cma12g00807 . 114 453 MRS2 Gene Family AT5G22830 82.1 8.0e-153 537.7
Cma13g00268 . 114 442 MRS2 Gene Family AT5G22830 82.7 1.1e-149 527.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00187 Cma_Chr17 FPKM 15.674373 17.088268 7.587628 7.673823 10.416573 11.307995 11.197406 7.500924 6.868315 7.180742