Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00189 ATGGATTTCGTCGAACTGGAGGCGATCGAAGGCCTCCGATGGTCATGGAACTCATGGCCGGTTTCTAAAGCTGAATCATTGGCTCTGGTTATTCCTCTCAGCATTATGTGTACGCCATTGATGCAATCCGTCGAGCTCCCTACACTTTCTTATGAGCCTCTCTCGTGTCTTAAATGTGGTGCCGTTTTGAACCCCTATGCTCGTGTCGATTACACGTCTCGCATTTGGTTCTGCTCGTTTTGTTACCATAAGAATTTTTTCCCTCGTTCTTATGCTGATATTGGAGAGACAAATCTTCCCGCAGAGCTTTTTCCGACTTACAGTACGGTGGAGTATGCGCCCAGTAGGAAGATCGAAAGCCCTGTTGCGAATTCTGGTTCCAATATGAATACGAGCCGTAATTGGGCGAGAAATCATTCGTCTTCTTCTCTTTCAGTATCAGCTTCTTCATCGCTGCCGGCTCGAGATTCCCGTGGAAATGGGCCGGCCTTCGTGTTCGTTGTTGATAATTGTTCGGTAGAAAAGGAGCTTCAAGCACTTAAAAATGAGTTATTACTCGTTGTGGAACATCTTCCGGAGAATGCTTTAGTGGGTTTGATTGCTTTTGATTCAATGGTTCATGTTTATGACCTTAAGTTTTCTGAATGCTCAAGGGTCGTCCTCTTTCCTGGGGATCGTGAGCTCTCGTCACTTCAGACCCAACAATTGTTGGGGATTTATGGGATGAAGCAGCTGCAGCTAGGTAAGACACCAGTTGTTCCCACACAGGGATTTTTGTTACCAATATCTGAATGTGAGTTCAACATCACTACTGCAATGGAAGAGATGAACACTTCACTTAATGTAACTGGCCATCGACCTCGGAGGGCAACTGGTGCTGCAATATCAGCTGCCGTTGCACTTTTGGAAGGATGCCGAGTGAACTCTGGTTCTCGTGTCATGGTTTTCACCTCTGGCCCTGCAACGGTAGGTCCAGGAATCGTTGTCGATTCGGATCTCGCTCACTCCATCAGAACTCACAGAGATATTGTTAATGGCCAGGCACCTTACTTTAGGAAATCTAGTAGTTTCTACAAGGAATTGTCACAGAGGTTGTGTGATGGATCTGTAGTTCTTGATTTTTTTGCTTGCTCTCTCGATCAAGTTGGAGCAGCAGAGTTAAAAGTTCCTGTTGAAAACTCTGGTGGATTCATGATGTTAGGAGAGTCATTTGAGTCTAATCAATTCAAAAAGTGCTTGCGGCATATTTTTAGTCGGGACAAAGACGGTGAGCTGAATATGCATTTCGATGCAACTATCGAGTTAGTAACATCAATGGATGTAAAAATTTGTGGAGCTCTTGGACCTTGCGTCTCTCTTCGTAAAACGAACAACTCGGTGAGCGACAACGAAATTGGCGAAGGTGGTACTTACATTTGGAAGCTCAATACACTGTCCAGTAAAACCTGCATTTCCTTTTTCTTCCAAGTGAGTGAGGTGCAGAAAGTTCAACCTGGATCTGCGTTCTTCATTCAGTTTATAACACGATACAGAAAAGGAAACCTGGAGGTCCGTAAAAGAGTGACCACTGCCGCTAGGAGATGGGTTGCAAGCCATTCACCAGAAATCAAGGCTGGGTTTGATCAAGAAGCAGCAGCTTCCGTGATGGCTAGGCTTGCTATTAATCGAGCAGAGACGTGTTATGCTCGGGATGTTATCAGATGGCTTGATGATGCATTGATTTGTTTTGCCTCGAAGTTTGGTGACTATATACAAGAGGATCCTTCGACTTTCCGTTTGCAATCCAACTTCTCCTTGTACCCTCAATTCATGTACTACCTAAGAAGGTCCCAGTTTATCGACGTCTTCAACAGTTGTCCTGATGAAACTGCGTTCTATCGACTAATGCTAAACCGAGAGGGAGTCGTTGGTTCTCTTATCATGATACAACCTACACTTTTCCTCTACTCTTTCGATGGACCTCCTGTTCCTGTACTCCTAGACATTCGATCAATATCGCCGGATGTGATCTTGCTTTTTGATTCCTACTTCAACGTCGTTATTCATTACGGGTCCAAGATTGCTCAATGGAGGAAACTTGGTTACGACAAAGACCCAAACCTTGAGAACTTGAAGAAGCTACTAGAGGCTCCAGAGCTCGACGCTGAACAGCTTATTGCAGAACGTATACCAGTCCCTAAGCTTATCAAGTGTGATCAACATAGTAGTCAAGCTCGGTTTCTTCTTGCTAAGTTAAACCCATCGGTTACGCAGAACTCGACTTACAAGGAGGGATCAGACATAATCTTTACAGATGATTTAAGCTTGGAGGTTTTTATAGATCACCTACAAGCTCTTGCTGTGCAGGGCTGA 2352 44.6 MDFVELEAIEGLRWSWNSWPVSKAESLALVIPLSIMCTPLMQSVELPTLSYEPLSCLKCGAVLNPYARVDYTSRIWFCSFCYHKNFFPRSYADIGETNLPAELFPTYSTVEYAPSRKIESPVANSGSNMNTSRNWARNHSSSSLSVSASSSLPARDSRGNGPAFVFVVDNCSVEKELQALKNELLLVVEHLPENALVGLIAFDSMVHVYDLKFSECSRVVLFPGDRELSSLQTQQLLGIYGMKQLQLGKTPVVPTQGFLLPISECEFNITTAMEEMNTSLNVTGHRPRRATGAAISAAVALLEGCRVNSGSRVMVFTSGPATVGPGIVVDSDLAHSIRTHRDIVNGQAPYFRKSSSFYKELSQRLCDGSVVLDFFACSLDQVGAAELKVPVENSGGFMMLGESFESNQFKKCLRHIFSRDKDGELNMHFDATIELVTSMDVKICGALGPCVSLRKTNNSVSDNEIGEGGTYIWKLNTLSSKTCISFFFQVSEVQKVQPGSAFFIQFITRYRKGNLEVRKRVTTAARRWVASHSPEIKAGFDQEAAASVMARLAINRAETCYARDVIRWLDDALICFASKFGDYIQEDPSTFRLQSNFSLYPQFMYYLRRSQFIDVFNSCPDETAFYRLMLNREGVVGSLIMIQPTLFLYSFDGPPVPVLLDIRSISPDVILLFDSYFNVVIHYGSKIAQWRKLGYDKDPNLENLKKLLEAPELDAEQLIAERIPVPKLIKCDQHSSQARFLLAKLNPSVTQNSTYKEGSDIIFTDDLSLEVFIDHLQALAVQG 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 984350 987560 - CmaCh17G001890.1 Cma17g00189 312084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00189 783 Pfam Gelsolin repeat 655 741 IPR007123 -
Cma17g00189 783 SUPERFAMILY Zn-finger domain of Sec23/24 47 116 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cma17g00189 783 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 783 IPR037364 -
Cma17g00189 783 Coils Coil 701 721 - -
Cma17g00189 783 Gene3D Severin 643 747 IPR029006 -
Cma17g00189 783 Gene3D - 422 529 - -
Cma17g00189 783 Pfam Sec23/Sec24 beta-sandwich domain 429 529 IPR012990 -
Cma17g00189 783 Pfam Sec23/Sec24 trunk domain 162 414 IPR006896 GO:0006886|GO:0006888|GO:0030127
Cma17g00189 783 CDD Sec23_C 633 753 IPR037550 GO:0030127|GO:0090114
Cma17g00189 783 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 644 782 IPR036180 -
Cma17g00189 783 SUPERFAMILY vWA-like 162 419 IPR036465 -
Cma17g00189 783 Gene3D - 50 108 - -
Cma17g00189 783 Gene3D von Willebrand factor, type A domain 162 421 IPR036465 -
Cma17g00189 783 Pfam Sec23/Sec24 zinc finger 53 91 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cma17g00189 783 Gene3D Sec23/Sec24 helical domain 538 780 - -
Cma17g00189 783 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 783 - -
Cma17g00189 783 Pfam Sec23/Sec24 helical domain 541 637 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cma17g00189 783 SUPERFAMILY beta-sandwich domain of Sec23/24 2 540 - -
Cma17g00189 783 SUPERFAMILY Helical domain of Sec23/24 541 643 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00189 K14006 SEC23; protein transport protein SEC23 - csv:101204086 1437.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00981 Cma-Chr8:6134535 Cma17g00189 Cma-Chr17:984350 0 dispersed
Cma17g00189 Cma-Chr17:984350 Cma18g00667 Cma-Chr18:6167898 6.64E-22 dispersed
Cma17g00189 Cma-Chr17:984350 Cma14g01528 Cma-Chr14:11560832 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g606 . Blo12g00355 Bda03g00850 . Bpe04g00804 . Bma04g00750 . . Cmo17g00185 . . . . . . . . . . . . . . Cla06g00627 Cam06g0666 Cec06g0670 Cco06g0675 Clacu06g0653 Cmu06g0646 Cre06g1414 . . . . . Csa02g01104 Chy05g00363 . . . . . . . . . Sed04g1952 . . . Cma17g00189 . Car17g00167 Cpe12g00162 . Bhi12g02260 Tan06g2465 Cmetu05g0430 . Hepe03g0247 . Lcy13g0328 . . . . . . . Lsi09g01277 . . Cme05g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011145 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00189 Cma_Chr17 FPKM 6.236339 7.628238 6.605592 6.225276 8.76627 7.215233 9.101699 7.288126 6.32557 6.669218