Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00193 ATGTTCGTGAAGCTGCAGTATTTGGATACGCCCTGCTTCCCTGGCCTGAGTTCCACCCTCAGGTCATCCACCGTCGGAGTCTCAATTTCTCCCCCTGATAATCTCGTCCCCATTTCCAGGAAGCCCAAACACAGCTGGATTTCTGAATGTCCGAACAGAGACTCAAAGAACGTCGGTGGAGTTAAAAAATACACTAATGATAATGGTGGTCGCCGGCAGGAAACTCGCCTGAAAAAAGCGAGTAAAACGGAGGAACGAGAACCCCACATAAGAAATCGCCATTTGGGTAATAGGGTTGTGAAAAAGGATGAATGGGAAGATGGAAATGGGTCGGTGGAAAGAGTGCACCCCAAGTGTTCGACGAAATGCCTATCGTATGGTGGATGCATACCAGCGATTTTGCAAGCGTTGGATGAAGTCAGTGACTTGGATGAAGCACTGAAGCCTTGGAAAGATAAGCTCAATAGCAAGGAAAGGAGTATAATTCTGAAAGAGCAGACGAGTTGGGAGAGGGCTTTGGAGATTTTCGAGTGGTTTAAAATGACAGGTAGTTATGAAGTTAATGTGATTCACTATAATATTGTTCTTCGGATTCTTGGGAAGGCCCAGAAATGGAGACTAGTTGAGAGTTTGTGGGCAGAGATGAACAAAAGGGGTATTAATCCGATAAATTCGACTTATGGAACGTTGATCGATGTCTACGGGAAAGGAGGCTTTACAGAAGAGGCGTTGGCATGGCTTGAGAGGATGAACGAACAGAGAATGGAACCAGATGAGGTTACCATGGGAATCGTTGTTCAATTGTATAAGAAAGCCGGTGAGTTTCAGAAGGCTGAAAGTTTCTTCAAGAAGTGGTCATCAAGAAACTCAACAAAATGTGAGATTACCAACCAGAACAAGGTAGCTTCTGCTGAAGTTGAGAATTCTCTGCACCCTCATGTTAGTTTGAGTACCTATACATATAATACATTGATTGACACATATGGGAAGGCTGGACAGCTACAAGAAGCCTCAACGACTTTCGAAAACATGCTCAACGAAGGAGTTGCGCCGACGACTGTGACGTTCAATACTATGATTCACATTTGTGGCAACCATGGCAAGTTGAAAGAAGTGACATTGCTAATGCAGAAGATGGAGGAGCTTCAATGCCCACCAGATACAAGAACATACAATATCCTCATTTCTCTTCATGCTAAGCATGATAACATTGACTTGGCTTCAAATTATTTTGCAGAGATGAAGGAGGCTTGTCTTCAGCCGGATATAGTGAGCTACCGTACTCTTTTGTATGCTTATTCTATCAGGCAGATGGTTGTGGAGGCTGAACAACTCGTAGCCGAAATGGATGAAAGGGGACTTGAGATCGACGAATTCACCCAATCGGCACTGACCCGTATGTACATCGATGCAGGAATGCTCGAAAAGTCATGGTCGTGGTTCTGGAGATTTCATCTTACAGGGCGTATGAGCTCCGAGTGTTATTCGGCTAATATTGATGCATTTGGAGAGCGTGGATGCATTGTAGAAGCAGAGAGAGTTTTTATCAGCTGCCAAGAAGAGAAGAAGCTCACAGTCCTTGAGTATAATGTGATGATTAAAGCCTATGGTGTGGTAAAGGATTATGTCAAAGCACAAAAATCATTTGATAGTATGGAGAGTAATGGCGTCACTCCTGATAAATGTAGCTATAGTTCTCTGATACAGATATTGTGTGGTGCTGACATGCCGGCCATGGCACTCTCTTATCTGAGGAAGATGCAGTCAGCTGGATTGGTAAGTGATTGCATTCCATATTCGGTGGTTATATCGAGCTTTTCGAAACTCGGTTATTTGGAAAAGGCGGACGAACTTTATAGAGAGATGACCGAACATGGTATGCAGCCTGATATCGTTGTTTATGGTGTGCTGATAAATGCTTTTGCTGATGCTGGGAGTGTTAGAGAAGCTATTGGTTATGTCGACGCAATGAAACGGGCTGGTTTGCCTGGTAATACCGTTATATACAACTCGTTGCTAAAGCTCTACACCAAAGTTGACTACCTCAAAGAAGCACATGAAGCATACAAGATGCTTCAGCAAACGGATGATGGTCCAGCTATCTATTCTTCGAATTGTATGATCGATGTTTATAGCAAACGTTCGATGGATAAACAAGCGGAAGAGATATTCGAGAGGTTGAAGAGAAAAGGAGAAGCAAATGAGTTCACTTTTGCAATGATGTTGTGTATGTACAAGAAAAAAGGAAGATTACAGGAAGCCATTAGTATTGCAAGACAGATGAAGGAACAAGGACTTTTAACAGAATTGTTGAGCTTCAATAACATGATCAGTTTATACGCTATGGATGGTCGATTCAAGGAGGCGGTTAGTACATTCCAAGACATGATTAAAGCTTCCATTCAACCTGATGAATGTACGTATAAATCGCTCGGGGTCATTCTGTTAAAATGTGGCGTTTCGAAGCAGGCAATCAGAAAGCTAGAATTATCGGTAAAAAAGGACGCTCAGAGCGGAGTACAGGCGTGGGGTTCGGTTCTATCTTCTGTTATTGGAATGAGTATTAAGGATGACTATGTATAA 2583 42.93 MFVKLQYLDTPCFPGLSSTLRSSTVGVSISPPDNLVPISRKPKHSWISECPNRDSKNVGGVKKYTNDNGGRRQETRLKKASKTEEREPHIRNRHLGNRVVKKDEWEDGNGSVERVHPKCSTKCLSYGGCIPAILQALDEVSDLDEALKPWKDKLNSKERSIILKEQTSWERALEIFEWFKMTGSYEVNVIHYNIVLRILGKAQKWRLVESLWAEMNKRGINPINSTYGTLIDVYGKGGFTEEALAWLERMNEQRMEPDEVTMGIVVQLYKKAGEFQKAESFFKKWSSRNSTKCEITNQNKVASAEVENSLHPHVSLSTYTYNTLIDTYGKAGQLQEASTTFENMLNEGVAPTTVTFNTMIHICGNHGKLKEVTLLMQKMEELQCPPDTRTYNILISLHAKHDNIDLASNYFAEMKEACLQPDIVSYRTLLYAYSIRQMVVEAEQLVAEMDERGLEIDEFTQSALTRMYIDAGMLEKSWSWFWRFHLTGRMSSECYSANIDAFGERGCIVEAERVFISCQEEKKLTVLEYNVMIKAYGVVKDYVKAQKSFDSMESNGVTPDKCSYSSLIQILCGADMPAMALSYLRKMQSAGLVSDCIPYSVVISSFSKLGYLEKADELYREMTEHGMQPDIVVYGVLINAFADAGSVREAIGYVDAMKRAGLPGNTVIYNSLLKLYTKVDYLKEAHEAYKMLQQTDDGPAIYSSNCMIDVYSKRSMDKQAEEIFERLKRKGEANEFTFAMMLCMYKKKGRLQEAISIARQMKEQGLLTELLSFNNMISLYAMDGRFKEAVSTFQDMIKASIQPDECTYKSLGVILLKCGVSKQAIRKLELSVKKDAQSGVQAWGSVLSSVIGMSIKDDYV 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1019394 1021976 + CmaCh17G001930.1 Cma17g00193 312088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Cma17g00193 860 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 65 856 - -
Cma17g00193 860 Gene3D Tetratricopeptide repeat domain 132 293 IPR011990 GO:0005515
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 529 560 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 424 458 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 226 259 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 632 665 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 736 766 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 599 631 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 772 805 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 563 596 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Cma17g00193 860 TIGRFAM PPR: pentatricopeptide repeat domain 192 222 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cma17g00193 860 Pfam Pentatricopeptide repeat domain 618 677 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 769 803 IPR002885 -
Cma17g00193 860 MobiDBLite consensus disorder prediction 57 88 - -
Cma17g00193 860 Gene3D Tetratricopeptide repeat domain 699 853 IPR011990 GO:0005515
Cma17g00193 860 Gene3D Tetratricopeptide repeat domain 305 492 IPR011990 GO:0005515
Cma17g00193 860 Gene3D Tetratricopeptide repeat domain 496 698 IPR011990 GO:0005515
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Cma17g00193 860 PANTHER OS03G0162900 PROTEIN 65 856 - -
Cma17g00193 860 SUPERFAMILY TPR-like 383 759 IPR011990 GO:0005515
Cma17g00193 860 Pfam PPR repeat family 188 234 IPR002885 -
Cma17g00193 860 Pfam PPR repeat family 529 572 IPR002885 -
Cma17g00193 860 Pfam PPR repeat family 772 811 IPR002885 -
Cma17g00193 860 MobiDBLite consensus disorder prediction 67 88 - -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Cma17g00193 860 Pfam Pentacotripeptide-repeat region of PRORP 322 483 IPR033443 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Cma17g00193 860 Pfam PPR repeat 260 288 IPR002885 -
Cma17g00193 860 Pfam PPR repeat 737 766 IPR002885 -
Cma17g00193 860 Pfam PPR repeat 703 731 IPR002885 -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 734 768 IPR002885 -
Cma17g00193 860 SUPERFAMILY HCP-like 664 800 - -
Cma17g00193 860 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00193 - - - csv:101203255 1461.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00910 Cma-Chr12:6993012 Cma17g00193 Cma-Chr17:1019394 1.10E-06 dispersed
Cma17g00193 Cma-Chr17:1019394 Cma04g02165 Cma-Chr4:15171865 1.47E-24 dispersed
Cma17g00193 Cma-Chr17:1019394 Cma19g00563 Cma-Chr19:6387625 7.52E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g594 Blo01g00101 . . . . . . Bma05g01080 . Cmo17g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00871 . . . . . . . Cma17g00193 . Car17g00171 Cpe12g00165 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011985 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00193 Cma_Chr17 FPKM 1.193961 0.92892 2.31346 2.673705 10.901143 9.8512 11.717493 3.583302 3.591137 3.315989