Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00195 ATGGAGCCCGGTGGTCCGCCCACGCCGCCGCCGCTCCCTCCTCTGCCTACCGGCGCTATACTCCTCGGCAAGTACCAATTGGGACGTTTCCTCGGTCGTGGAAGCTTTGCCAAGGTGTACCAGGCCTGTTCTCTTGCCGATAACTCCATCGTCGCCGTTAAAATCATTGACAAGAACAAAACCATCGATGCCGCTATGGAGCCGTGCATTGTCCGTGAGATTGCCGTCATGCGCCGTCTTCAGCACCATCCGAACATCCTCAGAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCTGGCGGTGAGCTATTCGCGAAACTCCTACGCCGTGGACGGCTGACAGAATCAACCGCCCGCCGGTACTTTCAACAACTGGTCTCTGCTCTACATTTCTGTCACCAAAACGGTGTCGCTCATCGCGACATCAAGCCCCAAAATCTTCTACTCGATGAAAACGGTAACCTTAAGGTCTCCGACTTCGGTCTCTCGGCCTTACCAGAGCAGATCAAAGACGGAATGCTCCATACCGCATGCGGAACTCCAGCATACACCGCGCCGGAGGTTGTTTCCCGACGAGGCTACGACGGCGCTAAAGCCGACGCGTGGTCCTGCGGCGTTATCCTCTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGACAACAACCTGGTCGCCATGTACAAGAAGGTTTATCGACGGGAATATCACTTCCCCGATTCAATTTCGAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCTGATCCGAATACAAGGATGAGCATGGAGGCGTTGATGCAACATTCGTGGTTCAAGAAGTCGCTGCGATCGAAGCCCCAAATTAACAACAAGAGCTTGTTTGAATCATTGGGTAATTACAAATCTGATTTAGGGGTTTCTGGACTGAATGCGTTTCATATAATATCGATGTCTTCTGGGTTGGATCTGTCTGGATTGTTCGAGACAACGGATTGTAAGAAGAAGAGGTTTACGACGGGTGTGAGTATGGAGAAGGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTACAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTGGGGAAAGGAAGGATGATTCTGGTGGTGGAGGCTTTGAAAATAACCTCAAATCTGTTAATGGTGGAAGTGAAGGCAGCTGAATCCAAGATGGAGTTTGAGAGGACGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGGTTCCTGGCACTCAAATGAGGCAATGTGA 1293 50.66 MEPGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQACSLADNSIVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILRIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDENGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYHFPDSISKPARHLIFQLLDPDPNTRMSMEALMQHSWFKKSLRSKPQINNKSLFESLGNYKSDLGVSGLNAFHIISMSSGLDLSGLFETTDCKKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALKITSNLLMVEVKAAESKMEFERTHWGDLKAKLQDIVGSWHSNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1022473 1023765 - CmaCh17G001950.1 Cma17g00195 312090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00195 430 CDD CIPK_C 312 414 - -
Cma17g00195 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00195 430 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00195 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cma17g00195 430 PANTHER SERINE/THREONINE KINASE 16 427 - -
Cma17g00195 430 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00195 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cma17g00195 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Cma17g00195 430 Gene3D Transferase(Phosphotransferase) domain 1 18 310 - -
Cma17g00195 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 427 - -
Cma17g00195 430 SUPERFAMILY Protein kinase-like (PK-like) 21 286 IPR011009 -
Cma17g00195 430 Gene3D Kinase associated domain 1, KA1 311 422 - -
Cma17g00195 430 Pfam NAF domain 311 365 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01768 Cma17g00195 CCT
Cma08g01115 Cma17g00195 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00195 Cma-Chr17:1022473 Cma03g00303 Cma-Chr3:3915626 1.53E-129 dispersed
Cma14g01768 Cma-Chr14:12842347 Cma17g00195 Cma-Chr17:1022473 0 wgd
Cma17g00195 Cma-Chr17:1022473 Cma08g01115 Cma-Chr8:6916716 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69221 PF00069 Pkinase 3.20E-74 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00195 K12761 - csv:101215156 786.178