Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00199 ATGTCCGAATCGACGAGCCCGATAGCCCAACGGGTTCAGTCTTCTTCGTCTTCTTCTTCTTCTTCGATTGATACCAGAGGAAAACATAGGATACAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCGAGGATTCTGGAGGAAGAACTGGAACAGCTTGATAAACTGGACAAGGCATCAACAAAATGCAAAGAAATGCTGATCAACGTGGAAACAAGACCAGACCCCCTTCTCCCACAAACCCGTGGCCCTCTAAACCCGCTATGGGATCGATGGTTCGAAGGTCCGCCGGATTCTAAAGGTTGCAGATGCTGGGTATTGTGA 321 49.53 MSESTSPIAQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARILEEELEQLDKLDKASTKCKEMLINVETRPDPLLPQTRGPLNPLWDRWFEGPPDSKGCRCWVL 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1045406 1048095 - CmaCh17G001990.1 Cma17g00199 312094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00199 106 MobiDBLite consensus disorder prediction 1 31 - -
Cma17g00199 106 MobiDBLite consensus disorder prediction 1 26 - -
Cma17g00199 106 Coils Coil 28 58 - -
Cma17g00199 106 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 2 4 106 - -
Cma17g00199 106 Pfam GGL domain 32 106 IPR015898 GO:0007186
Cma17g00199 106 SMART G_gamma_2 32 106 - -
Cma17g00199 106 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3 4 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00199 K24772 GG1_2; guanine nucleotide-binding protein subunit gamma 1/2, plant - csv:101218730 177.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01761 Cma17g00199 CCT
Cma08g01118 Cma17g00199 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01554 Cma-Chr1:10817246 Cma17g00199 Cma-Chr17:1045406 1.18E-21 dispersed
Cma09g00506 Cma-Chr9:2278141 Cma17g00199 Cma-Chr17:1045406 1.81E-11 dispersed
Cma14g01761 Cma-Chr14:12821975 Cma17g00199 Cma-Chr17:1045406 1.52E-40 wgd
Cma17g00199 Cma-Chr17:1045406 Cma19g00016 Cma-Chr19:102762 2.36E-27 wgd
Cma17g00199 Cma-Chr17:1045406 Cma02g01780 Cma-Chr2:9908872 4.07E-35 wgd
Cma17g00199 Cma-Chr17:1045406 Cma08g01118 Cma-Chr8:6933176 2.81E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g582 Blo01g00107 Blo12g00347 Bda03g00858 Bda08g00260 . . Bma04g00758 Bma05g01087 Cmo08g01093 Cmo17g00193 . Cma14g01761 . Car14g01587 . . Cpe03g01477 Bhi01g00745 Tan10g0772 . Lac12g2240 Hepe05g1598 . Lcy11g1595 . . . . . . . . . . . Lsi05g01650 Csa02g01117 . Cme06g00561 . . . . Bpe05g00877 . . . Sed02g1357 . Cmo14g01801 Cma08g01118 Cma17g00199 Car08g01001 Car17g00176 Cpe12g00170 Cpe17g00167 Bhi12g02247 Tan06g2475 Cmetu05g0135 . Hepe03g0235 . Lcy13g0318 Cla05g00499 Cam05g0547 Cec05g0560 Cco05g0558 Clacu05g0544 Cmu05g0516 Cre05g0584 Lsi09g01286 Csa03g01278 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000959 2 4 2 2 1 2 5 2 2 3 2 2 5 3 3 3 2 3 5 2 3 3 3 3 3 3 3 3 5 1 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00199 Cma_Chr17 FPKM 16.477245 16.868507 7.317179 6.608088 3.213341 3.028883 3.825127 11.459142 12.320891 12.062753