Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00202 ATGGCGTCCATGGCTGCCGCCTTCATCAAACCCACAAACGCCTTCCCCCAGTCTCCAATAACCTTCGTCAAAACCATCTCACCGTCGATTCAACTCCCAATTTCTCTCAGGATTAGAAACAACGCTCGCCGTCGGATCCGGGTCTCGTGCGGGTTGATCGACCCGGATGGAGGCAAGCTTATGGACCTTATTGTGGACGAATCCATGAGGGCTTTCAAGAATCGGGAGGCTCTGAGTCTGCCCCGAGTCAAGCTGTCGCGAATCGATCTGCAATGGGTGCACATTCTGAGCGAGGGCTGGGCTAGCCCTCTTTCCGGGTTCATGAGAGAATCCGAGTTCCTCCAAACGCTTCATTTCAATTCGCTCCGTCTTCATGATGGATCGGTTGTTAACATGTCGGTGCCCATCGTTTTGGCCATCGACGATGCCGTCAAGACCCGAATCGGCGCCTCCTCTAAGGTTGCGCTCTTCGGCTCCGATGATCGCCCGGTTGCAATTCTCAATGATATTGAGATATACAAGCAACCGAAGGAAGAAAGGATTGCAAGAACATGGGGAACAACAGCTCCAGGTCTTCCTTATGTTGATGAGGCTATTAAGAATGCTGGAAATTGGTTGATAGGAGGTGATCTAGAGGTCATTGAACCAATCAAGTACCACGATGGCCTCGACTCGTTTCGATTATCGCCTGCACAACTTCGCAACGAGTTCATCAGCCGCAATGCCGATGCAGTGTTCGCTTTCCAGCTTCGCAATCCGGTGCATAACGGTCATGCTCTGCTCATGACCGATACTCGTCGACGCCTTCTTGATATGGGCTACACCAACCCTATCCTTTTGCTTAATCCATTGGGTGGCTACACCAAGGCTGATGATGTTCCTCTTCATTGGAGGATCAAACAACATCAAAAGGTTCTTGAAGATGGTGTTCTTGATCCCGAGACGACCGTTGTTTCCATTTTCCCATCGCCGATGCACTACGCCGGTCCAACCGAGGTGCAGTGGCACGCAAAGGCAAGGATCAATGCAGGGGCTAACTTTTACATTGTTGGTCGAGATCCTGCTGGTATGGGCCATCCTACTGAGAAGAGGGACCTTTATGATCCTGACCATGGGAAGAAAGTATTGAGCATGGCTCCTGGTTTAGAGCGCCTAAATATCCTTCCTTTCAAGGTTGCTGCATATGACAAAACTCGAGGCAAAATGGCCTTTTTTGATCCTTCAAGACCTCAGGATTTCCTCTTCATATCAGGCACCAAGATGCGAACTCTTGCAAGGAATAAGGAGAACCCTCCAGATGGGTTTATGTGTCCCGGTGGCTGGAGCGTATTGGTCGAATACTACGAAAGCTTAGTTCCAGCAAACATTGGGAGTATCCCCAAACCTGAAGCTGTAGCACAGCTTAAATCCTGTAGATCATAG 1422 49.93 MASMAAAFIKPTNAFPQSPITFVKTISPSIQLPISLRIRNNARRRIRVSCGLIDPDGGKLMDLIVDESMRAFKNREALSLPRVKLSRIDLQWVHILSEGWASPLSGFMRESEFLQTLHFNSLRLHDGSVVNMSVPIVLAIDDAVKTRIGASSKVALFGSDDRPVAILNDIEIYKQPKEERIARTWGTTAPGLPYVDEAIKNAGNWLIGGDLEVIEPIKYHDGLDSFRLSPAQLRNEFISRNADAVFAFQLRNPVHNGHALLMTDTRRRLLDMGYTNPILLLNPLGGYTKADDVPLHWRIKQHQKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLERLNILPFKVAAYDKTRGKMAFFDPSRPQDFLFISGTKMRTLARNKENPPDGFMCPGGWSVLVEYYESLVPANIGSIPKPEAVAQLKSCRS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1055807 1059670 - CmaCh17G002020.1 Cma17g00202 312097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00202 473 Gene3D HUPs 220 454 IPR014729 -
Cma17g00202 473 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 1 462 - -
Cma17g00202 473 TIGRFAM sopT: sulfate adenylyltransferase 55 446 IPR002650 GO:0000103|GO:0004781
Cma17g00202 473 CDD ATPS 80 447 IPR002650 GO:0000103|GO:0004781
Cma17g00202 473 SUPERFAMILY PUA domain-like 55 219 IPR015947 -
Cma17g00202 473 SUPERFAMILY Nucleotidylyl transferase 225 448 - -
Cma17g00202 473 Pfam PUA-like domain 53 215 IPR025980 -
Cma17g00202 473 PANTHER ATP SULFURYLASE 1, CHLOROPLASTIC 1 462 - -
Cma17g00202 473 Pfam ATP-sulfurylase 225 447 IPR024951 GO:0004781
Cma17g00202 473 Gene3D Sulfate adenylyltransferase 51 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00202 K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25] - csv:101218495 853.973
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01757 Cma17g00202 CCT
Cma06g01361 Cma17g00202 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01965 Cma-Chr1:12684135 Cma17g00202 Cma-Chr17:1055807 0 transposed
Cma14g01757 Cma-Chr14:12814230 Cma17g00202 Cma-Chr17:1055807 0 wgd
Cma17g00202 Cma-Chr17:1055807 Cma06g01361 Cma-Chr6:8898466 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g568 . . Bda03g00863 . . Bpe14g01215 . . . Cmo17g00197 Cma06g01361 Cma14g01757 Car06g01178 Car14g01581 Sed02g1352 Cpe08g00293 Cpe03g01475 Bhi01g00748 Tan10g0778 Cmetu05g1198 Lac12g2245 Hepe05g1594 . Lcy11g1590 Cla06g00616 Cam06g0654 Cec06g0658 Cco06g0663 Clacu06g0641 Cmu06g0635 Cre06g1402 . . Cone7ag0284 Cone4ag0277 . Csa02g01120 Chy05g00377 Cme06g00566 Blo02g00593 Blo07g00236 Bda11g00602 Bda13g00099 . Bpe13g00583 . Bma06g01575 . Cmo06g01374 Cmo14g01798 . Cma17g00202 . Car17g00179 Cpe12g00173 . Bhi12g02244 . . . . . Lcy13g0315 Cla05g00501 Cam05g0551 Cec05g0564 Cco05g0562 Clacu05g0548 Cmu05g0520 Cre05g0588 Lsi09g01290 Csa03g01282 Chy06g00534 Cme05g00494
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00202 Cma_Chr17 FPKM 193.439346 215.404663 43.985104 41.788551 12.301272 12.639145 10.753131 27.18084 28.748556 25.735125