Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00206 ATGGGAGAGCTAAAGAAGCTGGTGGAAGAAGGGAAGATAAAGTACATCGGGTTGTCTGAAGCAAGTGGAAACACAATCAGGAGAGCCCATGCTGTTCATCCAATCACTGTCGTTCAAATGGAGCATTCGTTGTGGAGTCGTGACATCGAAGATGACATAATTCCACTTTGTAGACTCGAAAGTGTAAGAAGAATTGGGGAGCTGGGAATCGGGATAGTGGCTTACAGTCCTCTGGGTCGAGGGTTCTTTGGGGGCAAAACAATTGCAGAGAGCTTGCCAAGTGAAAGCTCATTGGCTTATCATCCAAGGTTCAGCAAGGAGAGTTTAGAACAGAATGAAGCTATTTACAGAAGGCTTACTAACCTTGCTGTGAAGCACGGTTATACCACAGTTCAGTTGGCTTTAGCTTGGCTGCTCCATCAGGGTATTGATATTATTCCCATCCCAGGGACAACCAAACTTGGGAACCTTGACAGCAACATTGAGTCATTGGGTGTGAAGCTAACAGAGAAAAATTTCAAAGAAATTGGTGATGCCGTGCCGGTTGATGAAGTTAGAGGCCAGCGAGAATACGATGTTCTCACCAAATATATGTGGAAGTTTGCAGATACCCCATTAAGGAGTTGA 627 44.98 MGELKKLVEEGKIKYIGLSEASGNTIRRAHAVHPITVVQMEHSLWSRDIEDDIIPLCRLESVRRIGELGIGIVAYSPLGRGFFGGKTIAESLPSESSLAYHPRFSKESLEQNEAIYRRLTNLAVKHGYTTVQLALAWLLHQGIDIIPIPGTTKLGNLDSNIESLGVKLTEKNFKEIGDAVPVDEVRGQREYDVLTKYMWKFADTPLRS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1069504 1071212 + CmaCh17G002060.1 Cma17g00206 312101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00206 208 PANTHER ALDO-KETO REDUCTASE 4-RELATED 1 207 - -
Cma17g00206 208 SUPERFAMILY NAD(P)-linked oxidoreductase 1 179 IPR036812 -
Cma17g00206 208 Pfam Aldo/keto reductase family 1 176 IPR023210 -
Cma17g00206 208 Gene3D - 1 208 IPR036812 -
Cma17g00206 208 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 1 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00206 - - - cpap:110815911 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01460 Cma-Chr14:11109916 Cma17g00206 Cma-Chr17:1069504 1.67E-70 dispersed
Cma14g01467 Cma-Chr14:11179923 Cma17g00206 Cma-Chr17:1069504 9.53E-67 dispersed
Cma17g00206 Cma-Chr17:1069504 Cma15g01005 Cma-Chr15:6071059 1.57E-11 dispersed
Cma17g00206 Cma-Chr17:1069504 Cma01g01325 Cma-Chr1:9450119 1.84E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g561 . . . . . . . . . Cmo17g00198 . . . . . . . . . . . . . . Cla06g00614 Cam06g0652 Cec06g0655 Cco06g0659 Clacu06g0640 Cmu06g0634 Cre06g1401 . . . . . Csa02g01121 Chy05g00378 . . . . . . . . . Sed09g0732 . . . Cma17g00206 . Car17g00181 Cpe12g00174 . Bhi12g02241 Tan06g2480 Cmetu05g1903 . . . Lcy13g0314 . . . . . . . Lsi09g01291 . . Cme05g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001019 1 1 1 3 1 3 1 3 3 2 2 3 4 2 3 1 3 2 2 3 2 4 3 2 3 2 2 3 9 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00206 Cma_Chr17 FPKM 0.928051 2.288181 5.293211 5.72178 1.669769 2.570266 2.064569 51.113205 55.55117 49.467274