Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00211 ATGGCTATGGCTACTGCTTCTTTTCCTCCGCCGTCGGCCACCGCCTTCTCTGCAACTTCGTCAATTGTATTCGAGATCGGAAAGTTCAACGCCGTACTTGAAAAGGTCGAATCGGCTGGATGTTGTTCATCCGGCCGACATCTTCCGGCTCCTCCGCCGAAGCCACTACTAATCGGCCGGCCTTCCATCGCCGGAGAGTTCCCGGTGCTGCTGCTAATCCATGGCTATCTCCTTTACAACACTTTCTACTCTCAGCTTATCCATCAGATCGCCTCTCATGGCTTCATCGTCATCGCCCCTCAGCTATACTCAGTGGCTGGACCAGATACAAGCGAAGAAATCAAAGCAACAGCCGCCGTAATAAACTGGCTGCCGGAGGGTCTCCGGCAGCACCTCCCCCCGCACGTGAACCCAAATCTAAACAAAATAGCTCTCTCCGGCCACAGCCGCGGCGGCAAAACCTCCTTCGCCTTAGCCCTAGCTTTAGCCGAACAGAAATCTCCAAAATTATCAGCCTTAATCGGGCTCGATCCAGTGGACGGAACGGGCTCCGGAAAGCAAACGCACCCCCCAGTCCTCAAATACATCCCACAATCCTTCGATTTAGGGCTGCCGGTTCTGGTAATCGGGTCGGGTCTGGGAGAATTGAAGAGGAATCCCCTGTTTCCCCCATGCGCTCCGAAGGGCATCAACCATGAAGAGTTCTTCAAGGAATGTCGGAATCCGGCGCACTATTTTGTGGCGAAGGATTATGGACATTTGGATTTGCTGGACGATGAAACTGGAGGGCTTAGAGGGAAGGCGAGCTACTGCTTGTGTAAAAATGGGGATTCTAGAGAACCCATGAGGAGGTTTGTTGGTGGGGCGGTGGTTGCGTTTTTGAAGGCTTATTTGAATGGGGAAGACGGAGATTTGAGAGCCATTGAAGATGGGGATCTCTGCTTGCCTGTTCATCTTCAGACCGTTGAATCTCTTCTCTGA 981 52.6 MAMATASFPPPSATAFSATSSIVFEIGKFNAVLEKVESAGCCSSGRHLPAPPPKPLLIGRPSIAGEFPVLLLIHGYLLYNTFYSQLIHQIASHGFIVIAPQLYSVAGPDTSEEIKATAAVINWLPEGLRQHLPPHVNPNLNKIALSGHSRGGKTSFALALALAEQKSPKLSALIGLDPVDGTGSGKQTHPPVLKYIPQSFDLGLPVLVIGSGLGELKRNPLFPPCAPKGINHEEFFKECRNPAHYFVAKDYGHLDLLDDETGGLRGKASYCLCKNGDSREPMRRFVGGAVVAFLKAYLNGEDGDLRAIEDGDLCLPVHLQTVESLL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1088228 1089905 - CmaCh17G002110.1 Cma17g00211 312106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00211 326 Gene3D alpha/beta hydrolase 47 309 IPR029058 -
Cma17g00211 326 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 16 323 - -
Cma17g00211 326 SUPERFAMILY alpha/beta-Hydrolases 60 300 IPR029058 -
Cma17g00211 326 Pfam Chlorophyllase 18 319 IPR017395 GO:0015996|GO:0047746
Cma17g00211 326 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 16 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00211 K08099 E3.1.1.14; chlorophyllase [EC:3.1.1.14] - csv:101203653 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00211 Cma-Chr17:1088228 Cma02g01786 Cma-Chr2:9965099 3.61E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g552 . . . . . Bpe14g01210 . . . Cmo17g00204 . . . . . . . . . . . . . . Cla06g00609 Cam06g0647 Cec06g0650 Cco06g0653 Clacu06g0634 Cmu06g0628 Cre06g1395 . . . . . Csa02g01128 Chy05g00386 . Blo02g00588 . . . . . . . . . . . Cma17g00211 . Car17g00187 Cpe12g00179 . . . . . . . . . . . . . . . Lsi09g01296 . . Cme05g00484
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010850 0 1 2 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00211 Cma_Chr17 FPKM 2.525 2.157348 25.373264 27.224941 14.546017 9.196331 10.958775 13.978975 14.597385 15.354405