Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00221 ATGAACGAGGCACGTGTTCCGGCGGAAACCACCACCTTCATGACTGATTTTCTGAGACAGTGCGGCGGCTACGGCGTTATAGACGGCGGCTTGGCCACTGAACTGGAACGGCATGGCGCCGATCTTAACGATCCTCTCTGGAGCGCTAAATGCCTCGTCAGTTCCCCTCACATCGTCCGACGGGTACATTTAGACTACCTTGATGCTGGTGCCAATATCATTACCACAGCATCTTATCAGGCAACAATCCTGGGTTTTGAGGCTAAAGGATTTTCTAGAGATGAAAGTGAAGAATTGCTAAGAAAAAGTGTTGAAATTGCTCTTGAAGCTCGTGAGATCTATCTTGAACGATGTACAAAGGATTCTTGGGATTGGACTGCAAGTGAAAGGAGCTCGACGAGGCTGATTCTTGTAGCCGCCTCGGTCGGCAGCTACGGAGCTTATTTGGCTGATGGGTCTGAATACAGTGGGAAGTATGGTGATTCAGTTACTTTAGAAACACTGAAAGATTTTCACAGGAGAAGGGTGCAGATTTTGGCCAATGCAGGTGCTGACTTGATCGCGTTCGAGACGATTCCGAACAAGTTGGAAGCTCAAGCATATGCTGAGCTTCTTGATGAAGAGGGCATTGAAATTCCTGCTTGGTTTTCTTTCAACTCCAAGGATGGAATCAATGCGGTGAGTGGGGATTCTATAACTGATTGTGCCTCCATTGCAGATGCTTCGAAGCAAGTTGTTGCTGTGGGAATCAACTGTACTCCTCCCAGATATATTCATGGACTAATCTCGTTGATTCGGGAGGTCACTAACAAACCCATTGTGATTTATCCAAACAGCGGGGAGACATATGATGGTGAAACCAAACAGTGGTTGCAATCCGATGGAATGACAGGGGAAGACTTCGTATCATATGTAAGTAAGTGGAAGGAAGCAGGAGCCTCTCTGTTTGGCGGATGCTGCCGCACCACTCCAAACACAATCCAAGGCATAGCAAAAGCGCTTTCTTCTAAAGCCTTTTGA 1020 47.16 MNEARVPAETTTFMTDFLRQCGGYGVIDGGLATELERHGADLNDPLWSAKCLVSSPHIVRRVHLDYLDAGANIITTASYQATILGFEAKGFSRDESEELLRKSVEIALEAREIYLERCTKDSWDWTASERSSTRLILVAASVGSYGAYLADGSEYSGKYGDSVTLETLKDFHRRRVQILANAGADLIAFETIPNKLEAQAYAELLDEEGIEIPAWFSFNSKDGINAVSGDSITDCASIADASKQVVAVGINCTPPRYIHGLISLIREVTNKPIVIYPNSGETYDGETKQWLQSDGMTGEDFVSYVSKWKEAGASLFGGCCRTTPNTIQGIAKALSSKAF 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1123886 1128841 - CmaCh17G002210.1 Cma17g00221 312116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00221 339 SUPERFAMILY Homocysteine S-methyltransferase 22 336 IPR036589 -
Cma17g00221 339 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 2-LIKE ISOFORM X1 10 337 - -
Cma17g00221 339 Gene3D - 18 333 IPR036589 -
Cma17g00221 339 ProSiteProfiles Homocysteine-binding domain profile. 13 334 IPR003726 -
Cma17g00221 339 PANTHER ZGC:172121 10 337 - -
Cma17g00221 339 Pfam Homocysteine S-methyltransferase 26 334 IPR003726 -
Cma17g00221 339 PIRSF BHMT 17 259 IPR017226 GO:0008168|GO:0008270|GO:0009086
Cma17g00221 339 PIRSF BHMT 285 338 IPR017226 GO:0008168|GO:0008270|GO:0009086
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00221 K00547 mmuM, BHMT2; homocysteine S-methyltransferase [EC:2.1.1.10] - csv:101222725 589.341
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01134 Cma17g00221 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01509 Cma-Chr4:7654808 Cma17g00221 Cma-Chr17:1123886 2.22E-78 dispersed
Cma17g00221 Cma-Chr17:1123886 Cma17g01198 Cma-Chr17:8264821 9.79E-171 dispersed
Cma17g00221 Cma-Chr17:1123886 Cma08g01134 Cma-Chr8:6994695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g537 . . . . Bpe04g00819 . . . Cmo08g01107 Cmo17g00211 . . . . . . . . . . . . . . Cla06g00600 . . . . Cmu06g0620 . . . . Cone4ag0259 . Csa02g01137 Chy05g00394 . . . . . . . . . . . . Cma08g01134 Cma17g00221 Car08g01014 Car17g00196 Cpe12g00187 . . . . . . . . . . . . . . . Lsi09g01304 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000691 3 4 3 2 3 1 3 2 1 3 3 1 5 3 3 4 2 4 4 1 3 3 3 3 3 2 2 7 14 3 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00221 Cma_Chr17 FPKM 9.105151 9.61289 70.430367 67.657539 11.457132 12.843417 11.74929 75.189896 73.478683 72.591179