Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00227 ATGTCGCAACCCGTTTCGATTCCAACTACCGGATCCGAATTGGACGACCCCACCCTTCCCTGCTCCAACAATGGTGTAGAGGAAGAGGACCCGTTGATCTCACCTGTAGATGGAGAGTTGTCCTCTGATAGTAATAATGGTCATTCTGGATACTGGTTGAGTGGAGTCAAATTCTTTGGTGTAGATTTAACCCCTGATAATGTTGCTGTTGCAATGGTGTATTTTGTTCAAGGAGTTTTAGAACTTGCAAAGCTTGCTGTCAGTTTTTATTTAAAAGATGATTTGCATTTAGATCCTGCTGAGTCAGCTGTAATTTCTGGTTTCGCTGCATTGCCATGGCTGATCAAACCCCTCTATGGGTTTATTAGTGACTCTGTTCCTCTTTTTGGTTACCGAAGAAGGTCATACTTGATTTTATCAGGGCTTCTTGGTGCATTCTCATGGAGCTTTATGGCCATCCTTGTTAATAGCAAGTATAGTGCTGCTATGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGTGGTAGACTCGATGGTCGTAGAGAGGGCTCGTGGTGAATCACCAAGTATGTCCGGTTCTCTCCAGTCGCTATGCTGGGGATCATCTGCTTTTGGTGGTATTGTTAGTTCCTACATTAGTGGCTCCCTGGTGGATTCTTATGGTGTAAGGTTTGTATTTGGAGTAACAGCCTTGTTACCTTTGATAACAGCAGCAGTTGCTGTTCTTGTTGAAGAAAAGCGTGTTTATGCCTCATTAAATGAGCCTAATCTTCCTAAAAGTGGCTTGAGTTTTCTTGAAACCTCTAAACAGCACATATTTAATATATGGACTGCTATTAGACAGCCAAATATATATCTTCCCACACTATTCCTTTTTCTGTGGCAGGCAACGCCACAATCAGACTCGGCAATGTTCTTCTTTGTCACAAATAAACTCGGATTCACAGCCGAGTTTCTTGGACGAGTTAAGCTGGTTACTTCAGTTGCATCTTTCATTGGTGTAGGGTTGTACAATGGGTTTCTTAAAAATGTTGCTCTGAGGAAAATTTTTCTAATCATGTCAATAGTTGGTTCAGCTCTTGGGATGACACAGGTTTTTCTTATTACTGGATTGAATCGAAAGTTCGGCATAAGCGATGGTTGGTTTACTATTGGGGACTCTTTAATCATCACAGTTCTTGAGGGAATGGAAGCCACACTTTTTGCAACACTCATGTCAGTATTCAATGGAGGGAACCTTCTTGGAGGTCTGATAGGCGCTGCTTTGACTCAACTCTTTGGTATCACTAAAGATAGATTTAACAATTTAACCACTCTAGTAATCATATGCAATCTGAGCTCATTGCTACCTTTGCCCCTCCTTGGCCTTCTTCCAGAGGAAACTCCTGATCCCACCTCAAAACAGAGCTCAGATACAAGAACGGAGGTAGAAGAAGAATCAATCGACGCCATGAAGAAGGTTCATCCAGTCTCGAATAGGCAGAATCCAAATGGTCGTAACTCGCTTTCTCGTGCTCAATCGTTTCTAGGTTTAAACCCTAAGAAACTGCGGCGGTTGCCCCATGTTTTCAGTCGGGTTTTGGAGCTTCCATTTAGATCTGATGCCGATGTTTCGATTCTCGAAAACTCTGATTGCTTCCGATTCGTAGCGGAAACTAATGGAATTAGCGACGAATTTAGGGCGCATACGGTTCAAATCCATCCTGGCGTTATCAAGGTTGTGGTTAGACAAATTGGGGCTCTGGAATCGACGTTAGAGGAACTGGAGATCGACATGTGGAGATTTCGACTGCCGGATACAACTCTGCCAGAGCTTGCAACCGCCGCGTTCGCCAACGGGAAACTCGTGGTGACGGTTCCGAAGAGGGAGGACGCCGGAGAAGGTACGTGGGGGAATAAGAATGGGGGTTTTAAAGGTGGCCATTTAGTTCTTGTACAGTATTAA 1956 43.81 MSQPVSIPTTGSELDDPTLPCSNNGVEEEDPLISPVDGELSSDSNNGHSGYWLSGVKFFGVDLTPDNVAVAMVYFVQGVLELAKLAVSFYLKDDLHLDPAESAVISGFAALPWLIKPLYGFISDSVPLFGYRRRSYLILSGLLGAFSWSFMAILVNSKYSAAMCILLGSLSVAFSDVVVDSMVVERARGESPSMSGSLQSLCWGSSAFGGIVSSYISGSLVDSYGVRFVFGVTALLPLITAAVAVLVEEKRVYASLNEPNLPKSGLSFLETSKQHIFNIWTAIRQPNIYLPTLFLFLWQATPQSDSAMFFFVTNKLGFTAEFLGRVKLVTSVASFIGVGLYNGFLKNVALRKIFLIMSIVGSALGMTQVFLITGLNRKFGISDGWFTIGDSLIITVLEGMEATLFATLMSVFNGGNLLGGLIGAALTQLFGITKDRFNNLTTLVIICNLSSLLPLPLLGLLPEETPDPTSKQSSDTRTEVEEESIDAMKKVHPVSNRQNPNGRNSLSRAQSFLGLNPKKLRRLPHVFSRVLELPFRSDADVSILENSDCFRFVAETNGISDEFRAHTVQIHPGVIKVVVRQIGALESTLEELEIDMWRFRLPDTTLPELATAAFANGKLVVTVPKREDAGEGTWGNKNGGFKGGHLVLVQY 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1156704 1163408 + CmaCh17G002270.1 Cma17g00227 312122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00227 651 Pfam BT1 family 77 464 IPR039309 -
Cma17g00227 651 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 41 473 IPR039309 -
Cma17g00227 651 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 41 473 - -
Cma17g00227 651 CDD MFS_FBT 68 448 - -
Cma17g00227 651 MobiDBLite consensus disorder prediction 474 490 - -
Cma17g00227 651 MobiDBLite consensus disorder prediction 463 507 - -
Cma17g00227 651 MobiDBLite consensus disorder prediction 1 19 - -
Cma17g00227 651 Gene3D MFS general substrate transporter like domains 68 453 IPR036259 -
Cma17g00227 651 SUPERFAMILY MFS general substrate transporter 71 469 IPR036259 -
Cma17g00227 651 Coils Coil 575 595 - -
Cma17g00227 651 CDD ACD_sHsps-like 543 625 - -
Cma17g00227 651 TIGRFAM fbt: folate/biopterin transporter 69 476 IPR004324 GO:0016021
Cma17g00227 651 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00227 - - - cmax:111499111 883.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01712 Cma17g00227 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00369 Cma-Chr12:1902458 Cma17g00227 Cma-Chr17:1156704 1.64E-39 dispersed
Cma14g01717 Cma-Chr14:12661193 Cma17g00227 Cma-Chr17:1156704 3.21E-126 dispersed
Cma14g01719 Cma-Chr14:12665492 Cma17g00227 Cma-Chr17:1156704 2.49E-70 dispersed
Cma17g00227 Cma-Chr17:1156704 Cma20g00948 Cma-Chr20:4784136 1.21E-31 dispersed
Cma14g01712 Cma-Chr14:12645534 Cma17g00227 Cma-Chr17:1156704 2.89E-59 wgd
Cma17g00227 Cma-Chr17:1156704 Cma06g01399 Cma-Chr6:9046338 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g516 . . Bda03g00879 . Bpe04g00824 . Bma04g00777 Bma05g01107 Cmo08g01114 . . Cma14g01712 Car06g01211 Car14g01547 Sed02g1308 Cpe08g00263 Cpe03g01439 Bhi01g00801 Tan10g0835 Cmetu06g0267 Lac12g2272 Hepe05g1556 . Lcy11g1550 Cla06g00591 Cam06g0630 Cec06g0633 Cco06g0636 Clacu06g0616 Cmu06g0609 Cre06g1377 . . . . Lsi05g01609 . . Cme06g00605 Blo02g00535 Blo07g00221 Bda11g00579 Bda13g00117 Bpe05g00900 Bpe13g00604 Bma02g00839 Bma06g01558 Sed04g1911 Cmo06g01408 Cmo14g01756 . Cma17g00227 Car08g01022 Car17g00203 . . Bhi12g01701 Tan06g2515 Cmetu01g1394 . . . Lcy13g0289 Cla05g00539 Cam05g0588 Cec05g0598 Cco05g0597 Clacu05g0586 Cmu05g0556 Cre05g0625 . Csa03g01324 Chy06g00575 Cme01g01571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002132 1 3 1 1 1 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 2 2 2 2 2 5 6 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00227 Cma_Chr17 FPKM 4.521096 5.306403 3.209654 3.610264 2.226786 1.698213 2.231382 8.891265 8.30979 8.793083