Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00236 ATGGAGGACGGCGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAACAGAGGATGGGTTTGGAGGCGCTGGGGCTTCGGGGTCCCGTTTGGTTAATGCAAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGCAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTATGGACGAGAGTGGAAGTATCAAAAAGAAGGATAGGTTGCAGTACGTTAAGCGGAATAATGATGATTTAATCAACCGGATGGATGTGGATGGTTTACGAAGAAATGTGGAGACCTTAGAGGTTTTTGATTTCAATGAGTACGATGAAACTGACGGCGAGACTCGGCGGAGGAAGATTTTTAATGATAGTGGAGGACAGTTTCTTGGTTCCATGAAACTGCCTCGAAGTGGCATTGACAGGGAATTTGGAACCGCTTCTAGCAGGCATGCTTTGGTGGGCAAGAGAAAGAACTTGTATGCAGAGCAAACCGATTGCTTTGATCGAGATAGGCCTCCCCGAAAGATTAGCTTTGAGTCGGATAATGACGTACCTCATCTCCGAACATCCTTGTTGAGAGATAAGTTTAGGGGTCACTCTGAAGAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTAAAGGTCCTGGTAAACAAAAAGAAAAATGTGAGTGGATCATCCGAGATGTATGATCATTGCAAATTAGAAGAAAGTAGAAAGAATCGAAGGACTGAAGATACTCTGAAGACGAAAGTGACGGTTACACCTTCAGTGTACCCAGAAACTAAGCTTAATGTGAAACAGGATCCCTATTCTAAGCCAGAGAAAGACCAGACAGATTTTCAAACACCGTCATCAACAAAAAACATAAAGGGTTGCAGTTGGGATTCAGGTGACAGTAGTGTGTCATTGAAGCCGAGAAAAAGGGTTGTTGAAGCTCATAAATCTACCAGGAGGGCAAGTTGTGAAGTTGAAAAACTTCCATGTGAAGAGACTCCTCCAAGTACAGCAAAGGAAGGAAAAATAAAACGAGGCAGTGGAACAGAGAAACAAAAGTTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCGGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCGGTCTATGTTAATCCCAGTGGCACGGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTGAATGAAGAAGGTGCAGAGGCTAAGCCTAGTGCTGATGGTTCATTTACGCCAATATCAGATGATATTCTCAGTCAATTAACTAGGAAAACTCGAAAGAAAATTGAGAACGAATGGAAAAATAAGCAGAGAGATGATAGTGACAGTGAAAATGCCAGAGAAGCAATTGCACTGAGGTCTGCTGGTACAAAAAATGACATGGACAGCATAGACAGTGATAGCAATGAAGAAAAGTTAAGCACTTTCGTAAAGCAGGGTGGAAAATCTTGTAAAAATAAATTGAACGAGAATGGGTGTCCCAGTGTCAACTCCAAAGGTCAAAGCGCTGGTAAGTATTCACGTGATACCACTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAATAGGGGATTAGATTCAGAGAATGATGGATTTGTTCCATATACTGGTAAGAGGACTCTGCTTTCCTGGCTTATCGATTCTGGAACTGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACTAGAGACGGCATTCATTGCGGTTGCTGTAGCAAAATCCTCACTGTCTCAAAGTTTGAGATACATGCTGGAAGCAAATTACGTCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCGCTTTTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCTAAACGTCTCAGTTTCCACACAGTTGAAGTTGACGGTGATGATCCGAATGACGATACATGTGGCATCTGTGGAGATGGTGGAGACTTGATCTGTTGTGATGGATGTCCATCAACTTTTCATCAGGGTTGTTTAGATATTCAGATTCCTCCGGGAGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAATGTTGATATTTCTCAGGGAGAAAATACCCTTGTTCCTGAAATATCTACTTGTGTGTTATGCGAGAAAAAGTTTCATGAATCCTGCAGTGCGGAGATGGATACTCCTGTTCAGTCCAATGGTTCAGTCACCTCTTTTTGTGGCAAGAATTGCAGAGAGAAGTATTTGGGGGTGAAACATGAATTAGATGCAGGATTCTCATGGTCTCTTATCCGTAGAACAAATGAAGATCCGGATGTATCTGTTCGTGGGCTTTCTCAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCAATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTACAACTGCGGATCAAACTTTTATAGGCTTAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCGACAATCAGGTTTCATGGCACTAAGTTAGCTGAGATGCCATTCATCGGAACCCGCCATATATATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCGATCGAATCTGCTCTCCGCACGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCATACATGGAATGTGATTTTTGGCTTTAGTTCTTTGGAGCCATCACTCAAACAAGAAATGAGATTGATGAACATGTTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCCAAGAGTCAATTGTTGAGGACAATCCTTCTACTGGCTCAGGTTTTTGCTTAGAAGGTGCAAAGCGAACGGATTGTAGAAGCACAGGGTTTAGTAGTCCTAAGATGGATACAGAGACCTCGTCTGGCCACGAACCTCGAAGTTTTGATGACACCGAACAGCATCACTTTAAGGCAAAAACAAATGAAGTTGCTGTCACTAATCCGAATCCTGAATCCGTGTCTGTCTCTCTAAATGATACTTCTACTGCTAATAGCCCTCTGGATGCATTTTGTGAAGCTAAAACGCCTTGTTCTCCTATGCAAACCGTAACTTCGGATTCTGATTCCGATGATAAGCCTGGAATTCGGCATGGTTTAGAGGATCGTTCACAGTCGACTTCCCAATGTATGGCAGCTGATACGTCTTTGAACAATTTTCTTGAACCTGAGGTCAAGGTTTCAGATGAAGGAATCATTTGTTCCAACGCTCATACTGGGCACAAGTTGGCCGACTCCGTTTACGTGAGGAAATCTTTTTCTCCTACTACAGGCAATGGCACGTTTGAGCTCGAAAACAACATACCTGTAATGGATTCTCCTGAAGATGATGCACACGCTAATTCTCTTAAACCTGCTCGACCCTTCGAAATTACATCGGATTGCAAAAATGCAATAGCTTATGTGAAAGAAGCTATTTCTGATGGAATTTGTGGCAGTGAAAATTCTCCACAGTCGTGTGGGGCAAAAGCCAGAGAGGAGCCCTTGATGGAAGTAGCATGGTTCTATTCACTGCCTATCACTTCTGGAATTGCTGCTCAAACACGAGCTCGTTCATCGTTCTGGCTGGCTTGTCGGAAGCTCAGACTTCACAGTATGGACGACATATTTTCTAGAAATGTAGCATCTCCATTCTTGATCAAAGACATGGTTCCAGCACCGCTAATCTAA 3927 43.16 MEDGVRSGGPSGVLVKTRNSSGCLIVRKTEDGFGGAGASGSRLVNAKKEKKRPRLVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFGKDVMDESGSIKKKDRLQYVKRNNDDLINRMDVDGLRRNVETLEVFDFNEYDETDGETRRRKIFNDSGGQFLGSMKLPRSGIDREFGTASSRHALVGKRKNLYAEQTDCFDRDRPPRKISFESDNDVPHLRTSLLRDKFRGHSEEAIRVQGKNGVLKVLVNKKKNVSGSSEMYDHCKLEESRKNRRTEDTLKTKVTVTPSVYPETKLNVKQDPYSKPEKDQTDFQTPSSTKNIKGCSWDSGDSSVSLKPRKRVVEAHKSTRRASCEVEKLPCEETPPSTAKEGKIKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPSGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIENEWKNKQRDDSDSENAREAIALRSAGTKNDMDSIDSDSNEEKLSTFVKQGGKSCKNKLNENGCPSVNSKGQSAGKYSRDTTVKSSSGSNSRILHGRRGRKLGLLVRGSNRGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQGCLDIQIPPGDWHCPNCTCKYCGVANVDISQGENTLVPEISTCVLCEKKFHESCSAEMDTPVQSNGSVTSFCGKNCREKYLGVKHELDAGFSWSLIRRTNEDPDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRTLKVEKLIIPAIAELMHTWNVIFGFSSLEPSLKQEMRLMNMLVFPGTDMLQKLLIQESIVEDNPSTGSGFCLEGAKRTDCRSTGFSSPKMDTETSSGHEPRSFDDTEQHHFKAKTNEVAVTNPNPESVSVSLNDTSTANSPLDAFCEAKTPCSPMQTVTSDSDSDDKPGIRHGLEDRSQSTSQCMAADTSLNNFLEPEVKVSDEGIICSNAHTGHKLADSVYVRKSFSPTTGNGTFELENNIPVMDSPEDDAHANSLKPARPFEITSDCKNAIAYVKEAISDGICGSENSPQSCGAKAREEPLMEVAWFYSLPITSGIAAQTRARSSFWLACRKLRLHSMDDIFSRNVASPFLIKDMVPAPLI 1308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1199775 1208480 - CmaCh17G002360.1 Cma17g00236 312131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00236 1308 MobiDBLite consensus disorder prediction 1027 1054 - -
Cma17g00236 1308 ProSiteProfiles Zinc finger PHD-type profile. 704 748 IPR019787 -
Cma17g00236 1308 Pfam PHD-finger 707 748 IPR019787 -
Cma17g00236 1308 SUPERFAMILY FYVE/PHD zinc finger 695 751 IPR011011 -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 367 381 - -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 1039 1054 - -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 493 563 - -
Cma17g00236 1308 PANTHER PHD FINGER FAMILY PROTEIN 1 1163 - -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 1097 1127 - -
Cma17g00236 1308 CDD PHD2_CHD_II 707 745 - -
Cma17g00236 1308 SMART PHD_3 706 746 IPR001965 -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 298 329 - -
Cma17g00236 1308 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 885 958 IPR016181 -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 44 58 - -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 514 563 - -
Cma17g00236 1308 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1163 - -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 357 381 - -
Cma17g00236 1308 Pfam Tify domain binding domain 629 679 IPR032308 -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 36 61 - -
Cma17g00236 1308 MobiDBLite consensus disorder prediction 308 329 - -
Cma17g00236 1308 ProSitePatterns Zinc finger PHD-type signature. 707 745 IPR019786 -
Cma17g00236 1308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 806 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00236 - - - cpep:111807565 2217.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01143 Cma17g00236 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00236 Cma-Chr17:1199775 Cma20g00340 Cma-Chr20:1669683 8.87E-85 dispersed
Cma17g00236 Cma-Chr17:1199775 Cma17g01186 Cma-Chr17:8208913 0 wgd
Cma17g00236 Cma-Chr17:1199775 Cma08g01143 Cma-Chr8:7048416 0 wgd
Cma17g00236 Cma-Chr17:1199775 Cma08g00340 Cma-Chr8:1940676 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36637 PF16135 TDBD 4.00E-22 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00236 Cma_Chr17 FPKM 6.404125 6.585921 7.240983 6.754026 8.086739 9.156079 9.037326 3.707192 3.858861 4.396382